hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13371763/chunk_1/iprscan-20080502-13371763.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0807 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 342.5 2.8e-98 1 SM00228 58.2 1e-12 1 SM00219 -33.4 4.5e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 43 316 .. 1 280 [] -33.4 4.5e-09 SM00220 1/1 43 316 .. 1 231 [] 342.5 2.8e-98 SM00228 1/1 643 723 .. 1 80 [] 58.2 1e-12 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 43 to 316: score -33.4, E = 4.5e-09 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl + +k + +Ga+G V++ + k++++ A K++++ +++++ KIAA0807 43 FETIKLISNGAYGAVFLVRHKstrQRFAMKKINKQNlilrnqIQQAF 89 rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld E i++ ++p +V ++ + + + l++vmEy+egGd+ KIAA0807 90 VERDILTFA--ENPFVVSMF-CSFDTK------RHLCMVMEYVEGGDCAT 130 yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv L++ + l+++ + eYL+ ++vHRDL N L+++ ++ KIAA0807 131 LLKNIGA-LPVDMVRLYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGH 179 vKIsDFGLsRdlyddDkkGeskdyYrkkggkggktll......PirWmAP +K +DFGLs+ + + Y +k+++ l+++ + AP KIAA0807 180 IKLTDFGLSKMGLMS----LTTNLYEGHIEKDAREFLdkqvcgTPEYIAP 225 EslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk E++ + D W+ G+ L+E + + + + ++ee++ ++ KIAA0807 226 EVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD------TPEELFGQVI 269 kGyRlpkPendlp.iSsvtCPdelYdlMlqCWaedPedRP...tFsel.. + + + + + + P++ dl ++ + +P +R ++++ e+++ KIAA0807 270 SDEIVWPEGD--EaL-----PPDAQDLTSKLLHQNPLERLgtgSAYEVkq 312 verl<-* + ++ KIAA0807 313 HPFF 316 SM00220: domain 1 of 1, from 43 to 316: score 342.5, E = 2.8e-98 *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril +e +k++ Ga+G V+l+r+k+t +++A+K+i++++ +++ +++ KIAA0807 43 FETIKLISNGAYGAVFLVRHKSTRQRFAMKKINkqnlilrnqiQQAF 89 rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr E++iL P++V ++ +f+++ +l++VmEy+eG Gd +llk+ g KIAA0807 90 VERDILTFaENPFVVSMFCSFDTkRHLCMVMEYVEG--GDCATLLKNIGA 137 rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK l+ +++r yf+++++aLeYLH+ gI+HRDLKP+N+L++s +h+K KIAA0807 138 ------LPVdMVRLYFAETVLALEYLHNYGIVHRDLKPDNLLITSmgHIK 181 laDFGlArql......................ttfvGTpeYmAPEvl... l+DFGl++ + +++ +++ +++ ++ ++ ++GTpeY+APEv+ ++ KIAA0807 182 LTDFGLSKMGlmslttnlyeghiekdarefldKQVCGTPEYIAPEVIlrq 231 gYgkpavDiWSlGcilyElltGkpPFp..qldlifkkig........... gYgk +vD+W+ G+ilyE+l+G+ PF +++++++f ++ +++ ++++++ KIAA0807 232 GYGK-PVDWWAMGIILYEFLVGCVPFFgdTPEELFGQVIsdeivwpegde 280 ..SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-* +p+a dL +klL+ +P +Rl+ + a e +k+HPff KIAA0807 281 alPPDAQDLTSKLLHQNPLERLGTgSAYE----VKQHPFF 316 SM00228: domain 1 of 1, from 643 to 723: score 58.2, E = 1e-12 *->gglGfsivg.............gifvssvvpGspAakaGrkslglLk + +Gf+++ + ++++ + ++ v +v++G+pA+ aG L+ KIAA0807 643 KKYGFTLRAirvymgdsdvytvHHMVWHVEDGGPASEAG------LR 683 vGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* GD I+ VNG ++v gl h e+v+l+ k+g+ kv + + + KIAA0807 684 QGDLITHVNG-EPVHGLVHTEVVELILKSGN-----KVAISTTPLE 723 //