hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13371763/chunk_1/iprscan-20080502-13371763.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0807 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 278.3 1.4e-80 1 PF00069.15.fs Protein kinase domain 276.4 5.2e-80 1 PF00433.14.fs Protein kinase C terminal domain 32.7 4.3e-09 1 PF07714.7.fs Protein tyrosine kinase 30.5 9e-09 1 PF00433.14.ls Protein kinase C terminal domain 34.6 3.1e-07 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 27.8 3.8e-07 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 24.6 0.00033 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.ls 1/1 43 316 .. 1 287 [] 278.3 1.4e-80 PF00069.15.fs 1/1 43 316 .. 1 287 [] 276.4 5.2e-80 PF07714.7.fs 1/1 115 189 .. 81 161 .. 30.5 9e-09 PF00433.14.fs 1/1 334 379 .. 1 47 [] 32.7 4.3e-09 PF00433.14.ls 1/1 334 379 .. 1 47 [] 34.6 3.1e-07 PF00595.14.ls 1/1 635 720 .. 1 86 [] 24.6 0.00033 PF00595.14.fs 1/1 670 720 .. 33 86 .] 27.8 3.8e-07 Alignments of top-scoring domains: PF00069.15.ls: domain 1 of 1, from 43 to 316: score 278.3, E = 1.4e-80 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar +e+++ + G++G V++ +hk+t++++A+K+i+k++ + ++ ++a+ KIAA0807 43 FETIKLISNGAYGAVFLVRHKSTRQRFAMKKINKQnLILRNQIQQAF 89 rlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls E il p++v ++++f +k+hl++V+Ey+egG d ++l+ KIAA0807 90 V--ERDILTFAENPFVVSMFCSFDTKRHLCMVMEYVEGG----DCATLLK 133 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnng + g+l + d ++ ++ +++ +leYLH+ gi+HRDLKP+N+L+ + g KIAA0807 134 ---NIGAL--PVDMVRLYFAETVLALEYLHNYGIVHRDLKPDNLLITSMG 178 vvdaflKiaDFGlAkkls............t.sss.l..ttfvGTpwYmA ++ K++DFGl+k + +++ +++ ++ +++ ++ ++GTp+Y+A KIAA0807 179 HI----KLTDFGLSKMGLmslttnlyeghiEkDAReFldKQVCGTPEYIA 224 PEvllggngygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirki PEv+l ++gyg++vD+W++G+ilye+l G PF g+ ++ +l+ ++ KIAA0807 225 PEVIL-RQGYGKPVDWWAMGIILYEFLVGCVPFFGD-----TPEELFGQV 268 lgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRlt... + e+ +pe d+ +l+++a+dL +k+L+++P +Rl++++ KIAA0807 269 IS--DEIVWPEGDE----------ALPPDAQDLTSKLLHQNPLERLGtgs 306 aeeilqHPwf<-* a e++qHP+f KIAA0807 307 AYEVKQHPFF 316 PF00069.15.fs: domain 1 of 1, from 43 to 316: score 276.4, E = 5.2e-80 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkr.kekskkdktar +e+++ + G++G V++ +hk+t++++A+K+i+k++ + ++ ++a+ KIAA0807 43 FETIKLISNGAYGAVFLVRHKSTRQRFAMKKINKQnLILRNQIQQAF 89 rlsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdyls E il p++v ++++f +k+hl++V+Ey+egG d ++l+ KIAA0807 90 V--ERDILTFAENPFVVSMFCSFDTKRHLCMVMEYVEGG----DCATLLK 133 etrrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnng + g+l + d ++ ++ +++ +leYLH+ gi+HRDLKP+N+L+ + g KIAA0807 134 ---NIGAL--PVDMVRLYFAETVLALEYLHNYGIVHRDLKPDNLLITSMG 178 vvdaflKiaDFGlAkkls............t.sss.l..ttfvGTpwYmA ++ K++DFGl+k + +++ +++ ++ +++ ++ ++GTp+Y+A KIAA0807 179 HI----KLTDFGLSKMGLmslttnlyeghiEkDAReFldKQVCGTPEYIA 224 PEvllggngygtkvDvWSlGvilyelltGkpPFsgevqdsldqlqlirki PEv+l ++gyg++vD+W++G+ilye+l G PF g+ ++ +l+ ++ KIAA0807 225 PEVIL-RQGYGKPVDWWAMGIILYEFLVGCVPFFGD-----TPEELFGQV 268 lgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkDPskRlt... + e+ +pe d+ +l+++a+dL +k+L+++P +Rl++++ KIAA0807 269 IS--DEIVWPEGDE----------ALPPDAQDLTSKLLHQNPLERLGtgs 306 aeeilqHPwf<-* a e++qHP+f KIAA0807 307 AYEVKQHPFF 316 PF07714.7.fs: domain 1 of 1, from 115 to 189: score 30.5, E = 9e-09 *->ggpglyiVtEymegGdLldfLrkhregrpLtlkdLlsfalQiAkGMe + l++V+Ey+egGd + L++ ++L++ + + ++ ++e KIAA0807 115 H---LCMVMEYVEGGDCATLLKN---IGALPVDMVRLYFAETVLALE 155 YLesknfvHRDLAARNcLVsenlvVKIsDFGLaR<-* YL++ ++vHRDL N L+++ +++K +DFGL++ KIAA0807 156 YLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSK 189 PF00433.14.fs: domain 1 of 1, from 334 to 379: score 32.7, E = 4.3e-09 *->kvksptDTsNFDpeFTsepptltpppdsr.lssgkqleFrGFtYvnp +++s++DTs+FD+ ++++++++ d+++ s+ le r+F+ ++p KIAA0807 334 QLESEDDTSYFDTRSERYHHMDS--EDEEeVSEDGCLEIRQFSSCSP 378 e<-* KIAA0807 379 R 379 PF00433.14.ls: domain 1 of 1, from 334 to 379: score 34.6, E = 3.1e-07 *->kvksptDTsNFDpeFTsepptltpppdsr.lssgkqleFrGFtYvnp +++s++DTs+FD+ ++++++++ d+++ s+ le r+F+ ++p KIAA0807 334 QLESEDDTSYFDTRSERYHHMDS--EDEEeVSEDGCLEIRQFSSCSP 378 e<-* KIAA0807 379 R 379 PF00595.14.ls: domain 1 of 1, from 635 to 720: score 24.6, E = 0.00033 *->evtlekedkrgglGfsikggsdkga.....dkgifvsevlpGsgaAe +++++ + + Gf+++ ++++ + v +v G g+A KIAA0807 635 PIIIHR--AGKKYGFTLRAIRVYMGdsdvyTVHHMVWHVEDG-GPAS 678 agGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +G L+ GD I+ vNG+++ +l h e+v+++ +sg+ +v++ KIAA0807 679 EAG-LRQGDLITHVNGEPVHGLVHTEVVELILKSGN-KVAISTT 720 PF00595.14.fs: domain 1 of 1, from 670 to 720: score 27.8, E = 3.8e-07 *->evlpGsgaAeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggs +v G g+A +G L+ GD I+ vNG+++ +l h e+v+++ +sg+ KIAA0807 670 HVEDG-GPASEAG-LRQGDLITHVNGEPVHGLVHTEVVELILKSGN- 713 evtLtvl<-* +v++ KIAA0807 714 KVAISTT 720 //