# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh07536.fasta.huge -Q ../query/KIAA0802.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
KIAA0802, 1578 aa
vs ./tmplib.23663 library
1985927 residues in 2037 sequences
Expectation_n fit: rho(ln(x))= 9.0999+/-0.00826; mu= -0.7025+/- 0.556
mean_var=296.5039+/-70.835, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40
Lambda= 0.074483
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 41, opt: 29, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2037)
KIAA0889 ( 535 res) hk08008 ( 535) 466 64.5 6.5e-11
>>KIAA0889 ( 535 res) hk08008 (535 aa)
initn: 827 init1: 362 opt: 466 Z-score: 287.8 bits: 64.5 E(): 6.5e-11
Smith-Waterman score: 804; 35.503% identity (58.777% similar) in 507 aa overlap (1076-1566:49-519)
1050 1060 1070 1080 1090 1100
KIAA08 EENHKGNLQRAVSVSSMSEFQRLMDISPFLPEKGLPSTSSKEDVTPPL--SPDDLKYIEE
:: .: :...::. . ... . :
KIAA08 WDWAPTTSLQEVNKTVLVFALTQHTDQGGRPECALSVISTNNDVSSSVLRRTKSVSSMSE
20 30 40 50 60 70
1110 1120 1130 1140 1150 1160
KIAA08 FNKSWDYTPNRGHNGGGPDLWADRTEVGRAGHEDSTEPF-PDSSWYLTTSVTMTTDTMTS
:.. : .: . .:: : . . . : :.:: :... ... . .
KIAA08 FESLLDCSP---YLAGG-DARGKKLPNNPAFGFVSSEPGDPEKDTKEKPGLSSRDCNHLG
80 90 100 110 120 130
1170 1180 1190 1200 1210
KIAA08 PEHCQKQP----LRSHVLTEQSGLRVLHSPPAVRRVDSITAAGGEG-----P-FPTSRAR
:: : ::.. ...:.:: .:::..::. .. :: : : . :.
KIAA08 ALACQDPPGRQMQRSYTAPDKTGIRVYYSPPVARRLGVPVVHDKEGKIIIEPGFLFTTAK
140 150 160 170 180 190
1220 1230 1240 1250 1260 1270
KIAA08 GSPGDTKGGPPEPMLSRWPCTSPRHSRDYVEGARRPLDSPLCTSLGFASPLHSLEMSKNL
. . : : .:: :. ::. ..:. :: .. :: . ::..::: :.
KIAA08 PKESAEADGLAESSYGRWLCN---FSRQRLDGGS--AGSPSAAGPGFPAALHDFEMSGNM
200 210 220 230 240
1280 1290 1300 1310 1320 1330
KIAA08 SDDMKEVAFSVRNAICSGPGELQVKDMACQTNGSRTMGTQTVQTISVGLQTEALRGSGVT
::::::.. ::.:. :: : .::. . :: : ..::::..:.::::::. :
KIAA08 SDDMKEITNCVRQAMRSGSLERKVKSTSSQTVGLASVGTQTIRTVSVGLQTDPPR-----
250 260 270 280 290 300
1340 1350 1360 1370 1380 1390
KIAA08 SSPHKCLTPKAGGGATPVSSPSRSLRSRQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPL
:: : : . .: :: :.::.:.. ...::....:: :::::::::::::. .
KIAA08 SSLH-------GKAWSPRSSSLVSVRSKQISSSLDKVHSRIERPCCSPKYGSPKLQRRSV
310 320 330 340 350
1400 1410 1420 1430 1440 1450
KIAA08 PKADQPNNRTSPGMAQKGYSESAWARSTTTRESPVHTTINDGLSSLFNIIDHSPVVQDPF
: :. ..:. .. : . ::::::::::.::: .:::::::::....:: ... .
KIAA08 SKLDSSKDRSLWNLHQGKQNGSAWARSTTTRDSPVLRNINDGLSSLFSVVEHSGSTESVW
360 370 380 390 400 410
1460 1470 1480 1490 1500 1510
KIAA08 QKGLRAGSRSRSAEPRPELGPGQETGTNSRGRSPSPIGVGSEMCREEGGEGTPVKQDLSA
. :. :..:. :. : :: : ::.::: . ..: ::: . ::
KIAA08 KLGM---SETRAKPEPPKYGIVQEFFRNVCGRAPSPTSSAGE-------EGTKKPEPLS-
420 430 440 450 460
1520 1530 1540 1550 1560
KIAA08 PPGYTLTENVARILNKKLLEHALKEERRQAAH---GPPGLHSDSHSLGDTAEPGPMENQT
: .: :.:::::::: . . .:: : . : :. : :: : : :
KIAA08 PASYHQPEGVARILNKKAAKLGSSEEVRLTMLPQVGKDGVLRD----GDGAVVLPNEVGG
470 480 490 500 510 520
1570
KIAA08 VLLTAPWGL
KIAA08 WDLSFLLVGGVSI
530
1578 residues in 1 query sequences
1985927 residues in 2037 library sequences
Scomplib [34.26]
start: Thu Dec 18 15:16:39 2008 done: Thu Dec 18 15:16:40 2008
Total Scan time: 0.890 Total Display time: 0.030
Function used was FASTA [version 34.26.5 April 26, 2007]