hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13231860/chunk_1/iprscan-20080502-13231860.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0799 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00242 1286.3 0 1 SM00295 166.0 3.8e-45 1 SM00233 141.3 1.1e-37 2 SM00139 139.6 3.3e-37 1 SM00015 63.9 2e-14 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00242 1/1 110 793 .. 1 771 [] 1286.3 0 SM00015 1/3 794 816 .. 1 23 [] 25.8 0.0061 SM00015 2/3 817 839 .. 1 23 [] 19.3 0.56 SM00015 3/3 840 862 .. 1 23 [] 18.9 0.73 SM00233 1/2 1266 1365 .. 1 82 [] 89.3 4.5e-22 SM00233 2/2 1446 1552 .. 1 82 [] 51.9 8.2e-11 SM00139 1/1 1600 1748 .. 1 166 [] 139.6 3.3e-37 SM00295 1/1 1749 2011 .. 1 232 [] 166.0 3.8e-45 Alignments of top-scoring domains: SM00242: domain 1 of 1, from 110 to 793: score 1286.3, E = 0 *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav ++p+ +egV+Dm+ Lt L+ ++++NL +RY++++IYTYiG++L +v KIAA0799 110 MHPTNEEGVDDMASLTELHGGSIMYNLFQRYKRNQIYTYIGSILASV 156 NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre NPY+ + ++Y + ++++Y+ +++gElpPH+FAiA+e+Yr+++++ KIAA0799 157 NPYQPIAGLYEPATMEQYS------RRHLGELPPHIFAIANECYRCLWKR 200 keNQsIiISGESGAGKTEatKkimqYLAavsg.........svesvedqi + NQ+I+ISGESGAGKTE+tK+i+++L+ +s+++ + + +++++ ve i KIAA0799 201 HDNQCILISGESGAGKTESTKLILKFLSVISQqslelslkeKTSCVERAI 250 LesNPiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEK Les Pi+EAFGNAKTv NnNSSRFGKf++++ +kG i+G+ I YLLEK KIAA0799 251 LESSPIMEAFGNAKTVYNNNSSRFGKFVQLNICQKGNIQGGRIVDYLLEK 300 SRVVsQakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqgg RVV+Q++gERNYHIFY LLaG+ +e+++e+ Ls+ pe+Y+YLnq+g KIAA0799 301 NRVVRQNPGERNYHIFYALLAGLEHEEREEFYLST----PENYHYLNQSG 346 tpfankryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFr c+++ +i+D+e F+e +++Am+v++fs+eE++++ r KIAA0799 347 -----------CVEDKTISDQESFRE----VITAMDVMQFSKEEVREVSR 381 ilAAILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeL +lA+ILHLGNieF++ ++ + ++ +++l + AeLLg+dp++L KIAA0799 382 LLAGILHLGNIEFITAGG--AQVSF-------KTALGRSAELLGLDPTQL 422 ekaLtkRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkr +aLt+R++ +ge +i +plnv+qAv++RD+LA+a+Y+ +F W++k+ KIAA0799 423 TDALTQRSMFLRGE---EILTPLNVQQAVDSRDSLAMALYACCFEWVIKK 469 INksl....sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhv IN+ ++++++ ++IG+LDI+GFE+Fe+N FEQf INyaNEKLQ +Fn+h+ KIAA0799 470 INSRIkgneDFKSIGILDIFGFENFEVNHFEQFNINYANEKLQEYFNKHI 519 FKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeC F lEQ EY rEG+ W+ Id++ DN +c+DLIEkK lG+l+l++Ee+ KIAA0799 520 FSLEQLEYSREGLVWEDIDWI--DNGECLDLIEKK----LGLLALINEES 563 lfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgr f P++TD+t+leKL h++h+++++++kp r + KIAA0799 564 HF---PQATDSTLLEKL-----HSQHANNHFYVKP-----------RVAV 594 taFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasLFpee ++F++kHYAG+V+Y+v+G LeKN+Dt ++dl++Ll++S++++i++LF+++ KIAA0799 595 NNFGVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLRESRFDFIYDLFEHV 644 adqsssaakekssggagksrkagrrepskgtisskkrppTvGsqFk.sLn ++++ + +++++s k r pTv+sqFk+sL KIAA0799 645 SSRNNQDTLKCGS---------------------KHRRPTVSSQFKdSLH 673 eLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRr +Lm+tL+s+nP+F+RCIKPN +K p +Fd+ +Vl+QLry+G+LE++RIR+ KIAA0799 674 SLMATLSSSNPFFVRCIKPNMQKMPDQFDQAVVLNQLRYSGMLETVRIRK 723 aGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqsl aG+++R+pf++F++RYkvL++ +++ ++ d + c lLq KIAA0799 724 AGYAVRRPFQDFYKRYKVLMR-NLALPE---------DVRGKCTSLLQLY 763 glgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-* ++e+q+GkTKvFlR + + LE++Ree KIAA0799 764 D-------ASNSEWQLGKTKVFLR-ESLEQKLEKRREE 793 SM00015: domain 1 of 3, from 794 to 816: score 25.8, E = 0.0061 *->rleraAiiIQaawRGylaRkryk<-* ++ +aA++I a++ G+laRk+y+ KIAA0799 794 EVSHAAMVIRAHVLGFLARKQYR 816 SM00015: domain 2 of 3, from 817 to 839: score 19.3, E = 0.56 *->rleraAiiIQaawRGylaRkryk<-* ++ +++iIQ+ +R +l R+r+ KIAA0799 817 KVLYCVVIIQKNYRAFLLRRRFL 839 SM00015: domain 3 of 3, from 840 to 862: score 18.9, E = 0.73 *->rleraAiiIQaawRGylaRkryk<-* l++aAi++Q+ RG aR+ y+ KIAA0799 840 HLKKAAIVFQKQLRGQIARRVYR 862 SM00233: domain 1 of 2, from 1266 to 1365: score 89.3, E = 4.5e-22 *->vikeGwLlkks.......k.swkkryfvLfngvLlyyksk...kpkg +k+GwL+kk++++++ ++++wkkr+fvL+ + L+y+++++++k+kg KIAA0799 1266 ALKQGWLHKKGggsstlsRrNWKKRWFVLRQSKLMYFENDseeKLKG 1312 sipLsgc.svre.p....cFeivt.drtlllqAeseeereeWvealqsai ++ +++++++ +++ +++++ i++ drt++l Aes+e++ +W++ l ++ KIAA0799 1313 TVEVRTAkEIIDnTtkenGIDIIMaDRTFHLIAESPEDASQWFSVLSQVH 1362 aka<-* a+ KIAA0799 1363 AST 1365 SM00233: domain 2 of 2, from 1446 to 1552: score 51.9, E = 8.2e-11 *->vikeGwLlkks.......k.swkkryfvLfngvLlyyksk....kpk +i +GwL+k +++++ ++ + kkr+fvL+ ++L yyks++++ + KIAA0799 1446 FIVRGWLHKEVknspkmsSlKLKKRWFVLTHNSLDYYKSSeknaLKL 1492 gsipLsgc.svre.p........cFeivt.dr..tlllqAeseeereeWv g++ L+++ sv++++++ ++ +++ ++ +r++++ l+++ e+++W KIAA0799 1493 GTLVLNSLcSVVPpDekifketgYWNVTVyGRkhCYRLYTKLLNEATRWS 1542 ealqsaiaka<-* +a+q++++ KIAA0799 1543 SAIQNVTDTK 1552 SM00139: domain 1 of 1, from 1600 to 1748: score 139.6, E = 3.3e-37 *->fskkPiktsLLkleddk.eedskeAvkiFkaILkfMGDlPlpkssss ++ +i+ +LLk++++++++d+++++++ +++L+ M+D P+p KIAA0799 1600 LPYGDINLNLLKDKGYTtLQDEAIKIFNSLQQLESMSD-PIP----- 1640 klytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQl ++q Ilq+g++ ++LRDE+YCQliKQ+ KIAA0799 1641 -----------------------IIQGILQTGHDLRPLRDELYCQLIKQT 1667 tk..........RGWeLLylctglFpPSeSrllkyLlqFLkrradqptet +k +++++ ++ + W++L++++++F+PS+ ++lkyL+++Lkr ++q+++t KIAA0799 1668 NKvphpgsvgnlYSWQILTCLSCTFLPSR-GILKYLKFHLKRIREQFPGT 1716 pqlmaqglakycle.....GaRkqpPsrlEleAik<-* + +++a +++e+ +++++R+++Psr E+eA+ KIAA0799 1717 E---MEKYALFTYEslkktKCREFVPSRDEIEALI 1748 SM00295: domain 1 of 1, from 1749 to 2011: score 166.0, E = 3.8e-45 *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey ++++++ Vy++ g++++++++s+tta e++e++ r l + ++++ KIAA0799 1749 HRQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAM-EDSRNM 1794 FgLqfedkded.............shWldpaktilkqdvkspksepltly F+L++++ ++d+ ++++ + +++++a+t +d +++y KIAA0799 1795 FALFEYNGHVDkaiesrtvvadvlAKFEKLAATSEVGDLP------WKFY 1838 FRvkFyppdwhgppeqlkeDptrynllylQvrddilsGrlpcpseeeall F+ ++ ++ ++++k+ + ++++Q+++ +++G++p p ee++ KIAA0799 1839 FKLYCFLDT----DNVPKDSVEFA-FMFEQAHEAVIHGHHPAP-EENLQV 1882 LAaLalqaefGdydpeeeek.............................. LAaL lq + Gdy ++++++ ++ + ++ + + ++++++ ++ ++ ++ KIAA0799 1883 LAALRLQYLQGDYTLHAAIPpleevyslqrlkarisqstktftpcerlek 1932 ............kkslkhvakelslkrflPkqlldsikasflqiqltlke ++++ +++ ++++++ +v+ + +++ + + ++++++ s KIAA0799 1933 rrtsflegtlrrSFRTGSVVRQKVEEEQMLDMWIKEEVSS---------- 1972 wrerIvelhkehaglspeeaklkYLelarrLpptYGvelF<-* r I ++++++ g+++e+a+ kY++l++ +p +YG++lF KIAA0799 1973 ARASIIDKWRKFQGMNQEQAMAKYMALIKEWP-GYGSTLF 2011 //