hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13231860/chunk_1/iprscan-20080502-13231860.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0799 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.ls Myosin head (motor domain) 938.5 2.4e-279 1 PF00063.11.fs Myosin head (motor domain) 936.7 9.1e-279 1 PF00784.8.ls MyTH4 domain 196.7 5e-56 1 PF00784.8.fs MyTH4 domain 194.8 1.9e-55 1 PF00169.19.fs PH domain 177.9 1.1e-53 4 PF00169.19.ls PH domain 139.6 7.8e-39 2 PF00612.17.fs IQ calmodulin-binding motif 57.7 3.6e-16 3 PF00612.17.ls IQ calmodulin-binding motif 63.7 5.5e-16 3 PF00788.13.fs Ras association (RalGDS/AF-6) domain 18.7 0.0003 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.ls 1/1 118 780 .. 1 791 [] 938.5 2.4e-279 PF00063.11.fs 1/1 118 780 .. 1 791 [] 936.7 9.1e-279 PF00612.17.ls 1/3 796 816 .. 1 21 [] 19.1 0.015 PF00612.17.ls 2/3 819 839 .. 1 21 [] 21.5 0.0028 PF00612.17.fs 2/3 819 839 .. 1 21 [] 19.5 9.7e-05 PF00612.17.ls 3/3 842 862 .. 1 21 [] 23.1 0.00089 PF00612.17.fs 3/3 842 862 .. 1 21 [] 21.2 3.1e-05 PF00169.19.fs 2/4 1266 1363 .. 1 92 [] 94.8 2.2e-28 PF00169.19.ls 1/2 1266 1363 .. 1 92 [] 96.8 6.2e-26 PF00169.19.ls 2/2 1446 1550 .. 1 92 [] 42.9 1e-09 PF00169.19.fs 4/4 1446 1550 .. 1 92 [] 40.8 5.7e-12 PF00784.8.fs 1/1 1636 1748 .. 1 122 [] 194.8 1.9e-55 PF00784.8.ls 1/1 1636 1748 .. 1 122 [] 196.7 5e-56 PF00788.13.fs 1/1 1751 1806 .. 1 63 [. 18.7 0.0003 Alignments of top-scoring domains: PF00063.11.ls: domain 1 of 1, from 118 to 780: score 938.5, E = 2.4e-279 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp v+D++ Lt l+ s+ +NL +RY+ +IYTY+G +L svNPY+ + KIAA0799 118 VDDMASLTELHGGSIMYNLFQRYK-RNQIYTYIGSILASVNPYQPIA 163 .iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESG ++Y + +++ Y+ ++ gElpPHiFAiA+e YR + ++ NQ+IlisGESG KIAA0799 164 gLYEPATMEQYSRRHLGELPPHIFAIANECYRCLWKRHDNQCILISGESG 213 AGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLE AGKTE+tK+++++l +s + + + +e + + +e il+s Pi+E KIAA0799 214 AGKTESTKLILKFLSVISQQSLELSLKE-----KTSCVERAILESSPIME 258 AFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVv AFGNAKT+ NNNSSRFGKf +++ +G i Gg+I +YLLEK RVv KIAA0799 259 AFGNAKTVYNNNSSRFGKFVQLNICQKGNI----QGGRIVDYLLEKNRVV 304 yQtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynP +Q++gERN+HIFY LLag+ +e ++e+ L++ p++Y+YLnqsg KIAA0799 305 RQNPGERNYHIFYALLAGLEHEE-REEFYLST---PENYHYLNQSG---- 346 cytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGF c++ +i D+e F+++ +A++++ f++ee r++ r+lA+ILhLGNie F KIAA0799 347 CVED-KTISDQESFREVITAMDVMQFSKEEVREVSRLLAGILHLGNIE-F 394 kqdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrrikt + + G +vs +t+ l + aeLLG+D++ L+ aL+ r + KIAA0799 395 ITAG---------GAQVSFKTA--LGRSAELLGLDPTQLTDALTQRSMFL 433 GgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsake + e + +p+nv+qA ++RD+LA a+Y F W+++kiN +++ e KIAA0799 434 R-----GEEILTPLNVQQAVDSRDSLAMALYACCFEWVIKKINSRIKGNE 478 QasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaek + IG+LDI+GFE F e+ KIAA0799 479 -------------------------------DFKSIGILDIFGFENF-EV 496 NSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqac N FEQ+ INY+NEKLQ +FN h+F lEQ EY rEg W+ Id +Dn c KIAA0799 497 NHFEQFNINYANEKLQEYFNKHIFSLEQLEYSREGLVWEDIDW-IDNGEC 545 idLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlthFAq dLIEkK +G+l+l+ Ee+ fP+atD+t+l+KL++++ ++h + + KIAA0799 546 LDLIEKK--LGLLALINEESHFPQATDSTLLEKLHSQHANNHF----Y-V 588 kpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisllk kp r ++F +kHYAG+V Y+++g+leKN+D+ ddl++ll+ KIAA0799 589 KP-R-------VAVNNFGVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLR 630 sSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksaklgsgk +S+ +++ +LF + s+++++ + KIAA0799 631 ESRF-DFIYDLFEHV---------------------------SSRNNQDT 652 gksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekKka k+g+k + +Tv+sqfk sl++Lm+tLss nP fvRCIKPN K + KIAA0799 653 LKCGSKHRR-PTVSSQFKDSLHSLMATLSSS---NPFFVRCIKPNMQKMP 698 gqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapktw +qFD+ +Vl+Qlr++G+LE ++Rir aG++ R +f++F++RY++L+++ + KIAA0799 699 DQFDQAVVLNQLRYSGMLE-TVRIRKAGYAVRRPFQDFYKRYKVLMRNLA 747 psgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* + +d + +c ++Lq + + +e+++GkTK+F+R KIAA0799 748 -------LPEDVRGKCTSLLQLY-----DASNSEWQLGKTKVFLR 780 PF00063.11.fs: domain 1 of 1, from 118 to 780: score 936.7, E = 9.1e-279 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp v+D++ Lt l+ s+ +NL +RY+ +IYTY+G +L svNPY+ + KIAA0799 118 VDDMASLTELHGGSIMYNLFQRYK-RNQIYTYIGSILASVNPYQPIA 163 .iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESG ++Y + +++ Y+ ++ gElpPHiFAiA+e YR + ++ NQ+IlisGESG KIAA0799 164 gLYEPATMEQYSRRHLGELPPHIFAIANECYRCLWKRHDNQCILISGESG 213 AGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLE AGKTE+tK+++++l +s + + + +e + + +e il+s Pi+E KIAA0799 214 AGKTESTKLILKFLSVISQQSLELSLKE-----KTSCVERAILESSPIME 258 AFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVv AFGNAKT+ NNNSSRFGKf +++ +G i Gg+I +YLLEK RVv KIAA0799 259 AFGNAKTVYNNNSSRFGKFVQLNICQKGNI----QGGRIVDYLLEKNRVV 304 yQtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynP +Q++gERN+HIFY LLag+ +e ++e+ L++ p++Y+YLnqsg KIAA0799 305 RQNPGERNYHIFYALLAGLEHEE-REEFYLST---PENYHYLNQSG---- 346 cytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGF c++ +i D+e F+++ +A++++ f++ee r++ r+lA+ILhLGNie F KIAA0799 347 CVED-KTISDQESFREVITAMDVMQFSKEEVREVSRLLAGILHLGNIE-F 394 kqdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrrikt + + G +vs +t+ l + aeLLG+D++ L+ aL+ r + KIAA0799 395 ITAG---------GAQVSFKTA--LGRSAELLGLDPTQLTDALTQRSMFL 433 GgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsake + e + +p+nv+qA ++RD+LA a+Y F W+++kiN +++ e KIAA0799 434 R-----GEEILTPLNVQQAVDSRDSLAMALYACCFEWVIKKINSRIKGNE 478 QasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaek + IG+LDI+GFE F e+ KIAA0799 479 -------------------------------DFKSIGILDIFGFENF-EV 496 NSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqac N FEQ+ INY+NEKLQ +FN h+F lEQ EY rEg W+ Id +Dn c KIAA0799 497 NHFEQFNINYANEKLQEYFNKHIFSLEQLEYSREGLVWEDIDW-IDNGEC 545 idLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlthFAq dLIEkK +G+l+l+ Ee+ fP+atD+t+l+KL++++ ++h + + KIAA0799 546 LDLIEKK--LGLLALINEESHFPQATDSTLLEKLHSQHANNHF----Y-V 588 kpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisllk kp r ++F +kHYAG+V Y+++g+leKN+D+ ddl++ll+ KIAA0799 589 KP-R-------VAVNNFGVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLR 630 sSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksaklgsgk +S+ +++ +LF + s+++++ + KIAA0799 631 ESRF-DFIYDLFEHV---------------------------SSRNNQDT 652 gksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekKka k+g+k + +Tv+sqfk sl++Lm+tLss nP fvRCIKPN K + KIAA0799 653 LKCGSKHRR-PTVSSQFKDSLHSLMATLSSS---NPFFVRCIKPNMQKMP 698 gqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapktw +qFD+ +Vl+Qlr++G+LE ++Rir aG++ R +f++F++RY++L+++ + KIAA0799 699 DQFDQAVVLNQLRYSGMLE-TVRIRKAGYAVRRPFQDFYKRYKVLMRNLA 747 psgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* + +d + +c ++Lq + + +e+++GkTK+F+R KIAA0799 748 -------LPEDVRGKCTSLLQLY-----DASNSEWQLGKTKVFLR 780 PF00612.17.ls: domain 1 of 3, from 796 to 816: score 19.1, E = 0.015 *->rraaikIQaawRGylaRkryk<-* +aa++I a++ G+laRk+y+ KIAA0799 796 SHAAMVIRAHVLGFLARKQYR 816 PF00612.17.ls: domain 2 of 3, from 819 to 839: score 21.5, E = 0.0028 *->rraaikIQaawRGylaRkryk<-* ++++IQ+ +R++l R+r+ KIAA0799 819 LYCVVIIQKNYRAFLLRRRFL 839 PF00612.17.fs: domain 2 of 3, from 819 to 839: score 19.5, E = 9.7e-05 *->rraaikIQaawRGylaRkryk<-* ++++IQ+ +R++l R+r+ KIAA0799 819 LYCVVIIQKNYRAFLLRRRFL 839 PF00612.17.ls: domain 3 of 3, from 842 to 862: score 23.1, E = 0.00089 *->rraaikIQaawRGylaRkryk<-* ++aai++Q++ RG +aR+ y+ KIAA0799 842 KKAAIVFQKQLRGQIARRVYR 862 PF00612.17.fs: domain 3 of 3, from 842 to 862: score 21.2, E = 3.1e-05 *->rraaikIQaawRGylaRkryk<-* ++aai++Q++ RG +aR+ y+ KIAA0799 842 KKAAIVFQKQLRGQIARRVYR 862 PF00169.19.fs: domain 2 of 4, from 1266 to 1363: score 94.8, E = 2.2e-28 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkk.kkpkg k+GwL+kkg+++++ ++++wkkR+fvL++++L+y+++++++k+kg KIAA0799 1266 ALKQGWLHKKGggsstlSRRNWKKRWFVLRQSKLMYFENDSeEKLKG 1312 sipLsgi.qvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiq ++ +++++++ + + ++n++ i++ dr t++l aes+e++ +W + ++ KIAA0799 1313 TVEVRTAkEIIDNTT--KENGIDIIMaDR-TFHLIAESPEDASQWFSVLS 1359 sair<-* ++++ KIAA0799 1360 QVHA 1363 PF00169.19.ls: domain 1 of 2, from 1266 to 1363: score 96.8, E = 6.2e-26 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkk.kkpkg k+GwL+kkg+++++ ++++wkkR+fvL++++L+y+++++++k+kg KIAA0799 1266 ALKQGWLHKKGggsstlSRRNWKKRWFVLRQSKLMYFENDSeEKLKG 1312 sipLsgi.qvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiq ++ +++++++ + + ++n++ i++ dr t++l aes+e++ +W + ++ KIAA0799 1313 TVEVRTAkEIIDNTT--KENGIDIIMaDR-TFHLIAESPEDASQWFSVLS 1359 sair<-* ++++ KIAA0799 1360 QVHA 1363 PF00169.19.ls: domain 2 of 2, from 1446 to 1550: score 42.9, E = 1e-09 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkk..kkpk i +GwL+k ++++++ + + kkR+fvL+ ++L yyk++ +++ + KIAA0799 1446 FIVRGWLHKEVknspkmSSLKLKKRWFVLTHNSLDYYKSSEknALKL 1492 gsipLsgi.qvtkvpdn..krkncFeirt.dr.etlllqaeseeerkeWv g++ L+++ +v+++++ k+ ++ ++ +r+ ++ l+++ e+++W KIAA0799 1493 GTLVLNSLcSVVPPDEKifKETGYWNVTVyGRkHCYRLYTKLLNEATRWS 1542 kaiqsair<-* +aiq++ KIAA0799 1543 SAIQNVTD 1550 PF00169.19.fs: domain 4 of 4, from 1446 to 1550: score 40.8, E = 5.7e-12 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkk..kkpk i +GwL+k ++++++ + + kkR+fvL+ ++L yyk++ +++ + KIAA0799 1446 FIVRGWLHKEVknspkmSSLKLKKRWFVLTHNSLDYYKSSEknALKL 1492 gsipLsgi.qvtkvpdn..krkncFeirt.dr.etlllqaeseeerkeWv g++ L+++ +v+++++ k+ ++ ++ +r+ ++ l+++ e+++W KIAA0799 1493 GTLVLNSLcSVVPPDEKifKETGYWNVTVyGRkHCYRLYTKLLNEATRWS 1542 kaiqsair<-* +aiq++ KIAA0799 1543 SAIQNVTD 1550 PF00784.8.fs: domain 1 of 1, from 1636 to 1748: score 194.8, E = 1.9e-55 *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW +++i+++q+Il++g++ ++LRDE+YCQ+iKQ++k+P+++++++l +W KIAA0799 1636 SDPIPIIQGILQTGHDLRPLRDELYCQLIKQTNKVPHPGSVGNLYSW 1682 eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqerLk ++l+++++tF+PS+++lkyL+ F+ +r++eq++g+e+e+ya++++e+Lk KIAA0799 1683 QILTCLSCTFLPSRGILKYLK--FHLKRIREQFPGTEMEKYALFTYESLK 1730 iYktqknGYqsRkypPsrlEieAik<-* kt++ R+++Psr+EieA++ KIAA0799 1731 --KTKC-----REFVPSRDEIEALI 1748 PF00784.8.ls: domain 1 of 1, from 1636 to 1748: score 196.7, E = 5e-56 *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW +++i+++q+Il++g++ ++LRDE+YCQ+iKQ++k+P+++++++l +W KIAA0799 1636 SDPIPIIQGILQTGHDLRPLRDELYCQLIKQTNKVPHPGSVGNLYSW 1682 eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqerLk ++l+++++tF+PS+++lkyL+ F+ +r++eq++g+e+e+ya++++e+Lk KIAA0799 1683 QILTCLSCTFLPSRGILKYLK--FHLKRIREQFPGTEMEKYALFTYESLK 1730 iYktqknGYqsRkypPsrlEieAik<-* kt++ R+++Psr+EieA++ KIAA0799 1731 --KTKC-----REFVPSRDEIEALI 1748 PF00788.13.fs: domain 1 of 1, from 1751 to 1806: score 18.7, E = 0.0003 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe + + Vy+ g ++ i ++++tTa eV+++l r + + +d+ + KIAA0799 1751 QEMTSTVYCHGGG---SCKITINSHTTAGEVVEKLIRGLAM-EDSRN 1793 dyvLvEvslvlergge<-* ++L+E + ++ ++ KIAA0799 1794 MFALFE---YNGHVDK 1806 //