hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13213380/chunk_1/iprscan-20080502-13213380.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0798 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 436.6 1.3e-126 16 SM00349 132.0 6.6e-35 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 38 98 .. 1 62 [] 132.0 6.6e-35 SM00355 1/16 235 257 .. 1 23 [] 27.5 0.0018 SM00355 2/16 263 285 .. 1 23 [] 27.4 0.002 SM00355 3/16 291 313 .. 1 23 [] 30.3 0.00026 SM00355 4/16 319 341 .. 1 23 [] 28.5 0.00089 SM00355 5/16 347 369 .. 1 23 [] 28.5 0.00093 SM00355 6/16 375 397 .. 1 23 [] 26.0 0.0053 SM00355 7/16 403 425 .. 1 23 [] 28.7 0.00081 SM00355 8/16 431 453 .. 1 23 [] 30.6 0.00022 SM00355 9/16 459 481 .. 1 23 [] 25.2 0.0092 SM00355 10/16 487 509 .. 1 23 [] 29.2 0.00057 SM00355 11/16 515 537 .. 1 23 [] 25.1 0.0095 SM00355 12/16 543 565 .. 1 23 [] 27.1 0.0024 SM00355 13/16 571 593 .. 1 23 [] 25.8 0.0061 SM00355 14/16 599 621 .. 1 23 [] 21.4 0.12 SM00355 15/16 627 649 .. 1 23 [] 25.5 0.0074 SM00355 16/16 655 677 .. 1 23 [] 29.6 0.00042 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 38 to 98: score 132.0, E = 6.6e-35 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk +t+eDV+V+F++EEW++L p Q++LYRdVMlE YsnL S+G +qvsk KIAA0798 38 LTLEDVTVEFTWEEWQLLGPFQKDLYRDVMLEIYSNLLSMG-YQVSK 83 pdliskLEqgeEpwi<-* pd +skLE+geEpw+ KIAA0798 84 PDALSKLERGEEPWT 98 SM00355: domain 1 of 16, from 235 to 257: score 27.5, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f k++L+ H rvH KIAA0798 235 HVCSE-CGKAFVKKsQLTDHERVH 257 SM00355: domain 2 of 16, from 263 to 285: score 27.4, E = 0.002 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C k+fs+k+ L++H+r+H KIAA0798 263 YGCTL-CAKVFSRKsRLNEHQRIH 285 SM00355: domain 3 of 16, from 291 to 313: score 30.3, E = 0.00026 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cgk+f+ k+ L++H+r+H KIAA0798 291 FICSE-CGKVFTMKsRLIEHQRTH 313 SM00355: domain 4 of 16, from 319 to 341: score 28.5, E = 0.00089 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f+ k++L+ H+r H KIAA0798 319 YICNE-CGKGFPGKrNLIVHQRNH 341 SM00355: domain 5 of 16, from 347 to 369: score 28.5, E = 0.00093 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f+ k+ L+ H+r+H KIAA0798 347 YICSE-CGKGFTGKsMLIIHQRTH 369 SM00355: domain 6 of 16, from 375 to 397: score 26.0, E = 0.0053 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f++k+ + H+r H KIAA0798 375 YICSE-CGKGFTTKhYVIIHQRNH 397 SM00355: domain 7 of 16, from 403 to 425: score 28.7, E = 0.00081 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f+ k+ +++H+r+H KIAA0798 403 YICNE-CGKGFTMKsRMIEHQRTH 425 SM00355: domain 8 of 16, from 431 to 453: score 30.6, E = 0.00022 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f++k++L+ H+r H KIAA0798 431 YICSE-CGKGFPRKsNLIVHQRNH 453 SM00355: domain 9 of 16, from 459 to 481: score 25.2, E = 0.0092 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f+ k+ L+ H+r+H KIAA0798 459 YLCSE-CGKGFTVKsMLIIHQRTH 481 SM00355: domain 10 of 16, from 487 to 509: score 29.2, E = 0.00057 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f+ k+ L+ H+r+H KIAA0798 487 YTCSE-CGKGFPLKsRLIVHQRTH 509 SM00355: domain 11 of 16, from 515 to 537: score 25.1, E = 0.0095 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f + L H+r+H KIAA0798 515 YRCSE-CGKGFIVNsGLMLHQRTH 537 SM00355: domain 12 of 16, from 543 to 565: score 27.1, E = 0.0024 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f k++L+ H+r+H KIAA0798 543 YICNE-CGKGFAFKsNLVVHQRTH 565 SM00355: domain 13 of 16, from 571 to 593: score 25.8, E = 0.0061 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cgk f+ k+ L+ H+++H KIAA0798 571 FMCSE-CGKGFTMKrYLIVHQQIH 593 SM00355: domain 14 of 16, from 599 to 621: score 21.4, E = 0.12 *->ykCpigCgksfssk.aLkrHmrvH<-* C++ Cg+ f +++L H +vH KIAA0798 599 CICSE-CGRGFAKEtELALHKQVH 621 SM00355: domain 15 of 16, from 627 to 649: score 25.5, E = 0.0074 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f+ k+ L+ H+r+H KIAA0798 627 YGCNE-CGKGFTMKsRLIVHQRTH 649 SM00355: domain 16 of 16, from 655 to 677: score 29.6, E = 0.00042 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C k fssk++L+ H+r+H KIAA0798 655 FVCSE-CRKAFSSKrNLIVHQRTH 677 //