hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13180169/chunk_1/iprscan-20080502-13180169.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0796 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00150 488.7 2.7e-142 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00150 1/12 104 205 .. 1 104 [] 39.4 4.8e-07 SM00150 2/12 212 314 .. 1 104 [] 32.9 4.5e-05 SM00150 3/12 328 427 .. 1 104 [] 7.3 1.9 SM00150 4/12 434 531 .. 1 104 [] 35.3 8.2e-06 SM00150 5/12 538 638 .. 1 104 [] 46.4 3.8e-09 SM00150 6/12 645 748 .. 1 104 [] 11.5 0.79 SM00150 7/12 755 855 .. 1 104 [] 5.8 2.6 SM00150 8/12 862 960 .. 1 104 [] 51.4 1.2e-10 SM00150 9/12 967 1074 .. 1 104 [] 56.5 3.5e-12 SM00150 10/12 1081 1183 .. 1 104 [] 56.3 4.1e-12 SM00150 11/12 1190 1290 .. 1 104 [] 69.0 5.9e-16 SM00150 12/12 1522 1625 .. 1 104 [] 77.0 2.4e-18 Alignments of top-scoring domains: SM00150: domain 1 of 12, from 104 to 205: score 39.4, E = 4.8e-07 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++ +++ l+ W e +e+ l+++ +D +sv++ lk +q+le+ KIAA0796 104 SEYENNVQCLKTWFETQEKRLKQQHRI--GDQASVQNALKDCQDLED 148 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae ++a+e +v+++++ g +Li++++++ + + l+el + W++L ++ KIAA0796 149 LIKAKEKEVEKIEQNGLALIQNKKEDVSSIVMSTLRELGQTWANLDHMVG 198 eRrqkLe<-* + + L+ KIAA0796 199 QLKILLK 205 SM00150: domain 2 of 12, from 212 to 314: score 32.9, E = 4.5e-05 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale + d + + l e+ l l ++le+v+++ + +q l+ KIAA0796 212 SSHKVAFDKINSYLMEARySLSRFRLLT--GSLEAVQVQVDNLQNLQ 256 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela ++l+ +e ++++ +qL++e+++p e++ + l+e+n rW++Lle KIAA0796 257 DDLEKQERSLQKFGSITNQLLKECHPPVTETLTNTLKEVNMRWNNLLEEI 306 eeRrqkLe<-* +e+ q + KIAA0796 307 AEQLQSSK 314 SM00150: domain 3 of 12, from 328 to 427: score 7.3, E = 1.9 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q + +++ e+ +e ++++ +d++ +D+ + + + +l + KIAA0796 328 KQCASTVQQQEDRTNELLKAATNKDIA--DDEVATWIQ--DCNDLLK 370 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae l + ++++ l+elgeqL+++ +a +I+ + l ++ +L++++ KIAA0796 371 GLGTVKDSLFVLHELGEQLKQQVDASAASAIQSDQLSLSQHLCALEQALC 420 eRrqkLe<-* +++ L+ KIAA0796 421 KQQTSLQ 427 SM00150: domain 4 of 12, from 434 to 531: score 35.3, E = 8.2e-06 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea + F + ++ leaW+ e+e++l+ +d+ s Dl+++++ +++++ + KIAA0796 434 ETFAKSLEALEAWIVEAEEILQGQDPSHSSDLSTIQERMEELKGQML 480 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae + ++ +d lnelg +L p ++ +r+++ln++W + ++ KIAA0796 481 KFSSMAPDLDRLNELGYRL------PLNDKEIKRMQNLNRHWSLISSQTT 524 eRrqkLe<-* eR kL+ KIAA0796 525 ERFSKLQ 531 SM00150: domain 5 of 12, from 538 to 638: score 46.4, E = 3.8e-09 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q Fl++++ ++ l +eq l+ e + +++ ++++ H+ ++a KIAA0796 538 QTFLEKCETWMEFLVQTEQKLAVEIS---GNYQHLLEQQRAHELFQA 581 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae e+ +++ + +++ g++L+e+ + +d +e +l+ l ++W+ + ++a+ KIAA0796 582 EMFSRQQILHSIIIDGQRLLEQGQVDDRDEFNLKLTLLSNQWQGVIRRAQ 631 eRrqkLe<-* +Rr + KIAA0796 632 QRRGIID 638 SM00150: domain 6 of 12, from 645 to 748: score 11.5, E = 0.79 *->qqFlrdadeleaWleeke....qllssedlgeskDlesveallkkHq q++ + a+ l +Wl e + l s +++ l++++ l ++ q KIAA0796 645 QRYREMAEKLRKWLVEVSylpmSGLGSVPIP----LQQARTLFDEVQ 687 aleaelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLl e+ ++ ++ e+g+qL+ ++ + +++++ l+e++e+W++ KIAA0796 688 FKEKVFLRQQGSYILTVEAGKQLLLSADSGAEAALQAELAEIQEKWKSAS 737 elaeeRrqkLe<-* ++ee+++kL KIAA0796 738 MRLEEQKKKLA 748 SM00150: domain 7 of 12, from 755 to 855: score 5.8, E = 2.6 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++ + +++ ++ l+ ++ l s+ l+ ++ e++ a + ++++le+ KIAA0796 755 EKCEKGIADSLEKLRTFKKKL-SQSLP--DHHEELHAEQMRCKELEN 798 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae + + + + +l l + L + + +d + er+e l+++WeeL+ ++ KIAA0796 799 AVGSWTDDLTQLSLLKDTLSAYISADDISILNERVELLQRQWEELCHQLS 848 eRrqkLe<-* Rrq+ KIAA0796 849 LRRQQIG 855 SM00150: domain 8 of 12, from 862 to 960: score 51.4, E = 1.2e-10 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale F ++ +el +Wl+ +e+++ + d+ +e +e+l k + + KIAA0796 862 AVFSEKNKELCEWLTQMEsKVSQNGDI---LIEEMIEKLKK---DYQ 902 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela +e+a +e +l+++ge+L ++s++ a eIe +l ++n+rW++Ll+l KIAA0796 903 EEIAIAQENKIQLQQMGERLAKASHESKASEIEYKLGKVNDRWQHLLDLI 952 eeRrqkLe<-* ++R +kL+ KIAA0796 953 AARVKKLK 960 SM00150: domain 9 of 12, from 967 to 1074: score 56.5, E = 3.5e-12 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea qq+ +++ l Wl e l+ + +s e+++++l ++q+l++ KIAA0796 967 QQLDKNMSSLRTWLAHIESELAKPIVYDSCNSEEIQRKLNEQQELQR 1013 elaaheervdalnelgeqLiee....sghpdaeeIeerleelnerWeeLl +++ h v ++ +l+e L+ + + + +++ ++I++ ++l++rW++++ KIAA0796 1014 DIEKHSTGVASVLNLCEVLLHDcdacATDAECDSIQQATRNLDRRWRNIC 1063 elaeeRrqkLe<-* +++ eRr k e KIAA0796 1064 AMSMERRLKIE 1074 SM00150: domain 10 of 12, from 1081 to 1183: score 56.3, E = 4.1e-12 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale q+Fl+d +e+Wl++ e++++ g + +++ lkk++a++ KIAA0796 1081 QKFLDDYSRFEDWLKSSErTAAFPSSSG--VIYTVAKEELKKFEAFQ 1125 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela + + + +++ +n++ ++L +e + a ++++ ++e n+rW++L++++ KIAA0796 1126 RQVHECLTQLELINKQYRRLARENRTDSACSLKQMVHEGNQRWDNLQKRV 1175 eeRrqkLe<-* ++L+ KIAA0796 1176 TSILRRLK 1183 SM00150: domain 11 of 12, from 1190 to 1290: score 69.0, E = 5.9e-16 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++F + d ++ Wl+e+ +l+ ++ ++ +v+a++k+++a+++ KIAA0796 1190 EEFETARDSILVWLTEMDLQLTNIEH---FSECDVQAKIKQLKAFQQ 1233 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae e++ +++++++++++geqLie+s++ da+ Iee l+el++ +e+ ++e KIAA0796 1234 EISLNHNKIEQIIAQGEQLIEKSEPLDAAIIEEELDELRRYCQEVFGRVE 1283 eRrqkLe<-* + ++kL KIAA0796 1284 RYHKKLI 1290 SM00150: domain 12 of 12, from 1522 to 1625: score 77.0, E = 2.4e-18 *->qqFlrdadeleaWleeke...qllssedlgeskDlesveallkkHqa qqF++d++ + aWl+++e++ ++l+ +l D++++e ++kk+++ KIAA0796 1522 QQFNSDLNSIWAWLGDTEeelEQLQRLELS--TDIQTIELQIKKLKE 1566 leaelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLle l++ ++ +++ + ++n ++ ++ ++ ++++rl ++n rW++++ KIAA0796 1567 LQKAVDHRKAIILSINLCSPEFTQA-DSKESRDLQDRLSQMNGRWDRVCS 1615 laeeRrqkLe<-* l+ee+r L+ KIAA0796 1616 LLEEWRGLLQ 1625 //