hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13180169/chunk_1/iprscan-20080502-13180169.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0796 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00435.11.fs Spectrin repeat 207.0 4.6e-61 12 PF00435.11.ls Spectrin repeat 203.6 4.2e-58 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00435.11.ls 1/9 101 206 .. 1 111 [] 15.0 0.0024 PF00435.11.fs 4/12 431 532 .. 1 111 [] 33.8 1.5e-09 PF00435.11.ls 2/9 431 532 .. 1 111 [] 35.7 1.5e-07 PF00435.11.ls 3/9 535 639 .. 1 111 [] 15.4 0.0022 PF00435.11.ls 4/9 752 856 .. 1 111 [] 5.1 0.015 PF00435.11.ls 5/9 859 961 .. 1 111 [] 40.0 7.6e-09 PF00435.11.fs 7/12 859 961 .. 1 111 [] 38.1 8.2e-11 PF00435.11.ls 6/9 964 1075 .. 1 111 [] 24.4 0.00038 PF00435.11.fs 8/12 964 1075 .. 1 111 [] 22.4 3.7e-06 PF00435.11.ls 7/9 1078 1184 .. 1 111 [] 2.0 0.027 PF00435.11.fs 10/12 1187 1291 .. 1 111 [] 25.3 5.4e-07 PF00435.11.ls 8/9 1187 1291 .. 1 111 [] 27.2 5.4e-05 PF00435.11.ls 9/9 1519 1626 .. 1 111 [] 38.9 1.6e-08 PF00435.11.fs 12/12 1519 1626 .. 1 111 [] 36.9 1.8e-10 Alignments of top-scoring domains: PF00435.11.ls: domain 1 of 9, from 101 to 206: score 15.0, E = 0.0024 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk + + ++ ++++ l+ W e +e+ L ++ + d ++vq+ lk ++ KIAA0796 101 ESWSEYENNVQCLKTWFETQEKRLKQQHR-IGDQASVQNALK--DCQ 144 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq +le+ + a + ve+++ + + +Li++ + + s + ++l eL + W++ KIAA0796 145 DLEDLIKAKEKEVEKIE--QNGLALIQNKKEDVSSIVMSTLRELGQTWAN 192 LlelaaeRkqkLee<-* L ++ + k L KIAA0796 193 LDHMVGQLKILLKS 206 PF00435.11.fs: domain 4 of 12, from 431 to 532: score 33.8, E = 1.5e-09 *->lllqqFqrdaddlesWieekealL..ssedyegkdleevqaLlkqlk l+++ F++ ++ le+Wi e+e++L+++++ + dl+++q+ ++ KIAA0796 431 LDYETFAKSLEALEAWIVEAEEILqgQDPSH-SSDLSTIQERME--E 474 HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW +k+ + + + + ++ ln el+ +L + ++ +r+++Ln++W KIAA0796 475 LKGQMLKFSSMAPDLDRLN--ELGYRL------PLNDKEIKRMQNLNRHW 516 eqLlelaaeRkqkLee<-* + ++ eR kL+ KIAA0796 517 SLISSQTTERFSKLQS 532 PF00435.11.ls: domain 2 of 9, from 431 to 532: score 35.7, E = 1.5e-07 *->lllqqFqrdaddlesWieekealL..ssedyegkdleevqaLlkqlk l+++ F++ ++ le+Wi e+e++L+++++ + dl+++q+ ++ KIAA0796 431 LDYETFAKSLEALEAWIVEAEEILqgQDPSH-SSDLSTIQERME--E 474 HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW +k+ + + + + ++ ln el+ +L + ++ +r+++Ln++W KIAA0796 475 LKGQMLKFSSMAPDLDRLN--ELGYRL------PLNDKEIKRMQNLNRHW 516 eqLlelaaeRkqkLee<-* + ++ eR kL+ KIAA0796 517 SLISSQTTERFSKLQS 532 PF00435.11.ls: domain 3 of 9, from 535 to 639: score 15.4, E = 0.0022 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk l+ q F+ +++ ++ + ++e+ L + ++ ++++ + ++ H+ KIAA0796 535 LQHQTFLEKCETWMEFLVQTEQKL-AVEI-SGNYQHLLEQQR--AHE 577 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq +++ae+ +q + ++ +++L ++++ ++ +e +l L +W+ KIAA0796 578 LFQAEMFSRQQILHSII--IDGQRLLEQGQVDDRDEFNLKLTLLSNQWQG 625 LlelaaeRkqkLee<-* + ++a++R+ KIAA0796 626 VIRRAQQRRGIIDS 639 PF00435.11.ls: domain 4 of 9, from 752 to 856: score 5.1, E = 0.015 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk +++++ + ++d ++ ++ ++ L s+ + + + ee+ a + ++k KIAA0796 752 KDWEKCEKGIADSLEKLRTFKKKL-SQSL-PDHHEELHAEQM--RCK 794 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq +le+ + + d + +l l + L + + ++ + er+e L ++We+ KIAA0796 795 ELENAVGSWTDDLTQLS--LLKDTLSAYISADDISILNERVELLQRQWEE 842 LlelaaeRkqkLee<-* L+ ++ R+q+ e KIAA0796 843 LCHQLSLRRQQIGE 856 PF00435.11.ls: domain 5 of 9, from 859 to 961: score 40.0, E = 7.6e-09 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH +++ F + ++l +W++++e ++++ d+ +e+++ L+k KIAA0796 859 NEWAVFSEKNKELCEWLTQMESKVsQNGDI--LIEEMIEKLKK---- 899 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe ++++e+a q++ +l+ +++e+L+ +++ + ei+++l +n+rW+ KIAA0796 900 -DYQEEIAIAQENKIQLQ--QMGERLAKASHESKASEIEYKLGKVNDRWQ 946 qLlelaaeRkqkLee<-* +Ll+l+a+R +kL e KIAA0796 947 HLLDLIAARVKKLKE 961 PF00435.11.fs: domain 7 of 12, from 859 to 961: score 38.1, E = 8.2e-11 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH +++ F + ++l +W++++e ++++ d+ +e+++ L+k KIAA0796 859 NEWAVFSEKNKELCEWLTQMESKVsQNGDI--LIEEMIEKLKK---- 899 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe ++++e+a q++ +l+ +++e+L+ +++ + ei+++l +n+rW+ KIAA0796 900 -DYQEEIAIAQENKIQLQ--QMGERLAKASHESKASEIEYKLGKVNDRWQ 946 qLlelaaeRkqkLee<-* +Ll+l+a+R +kL e KIAA0796 947 HLLDLIAARVKKLKE 961 PF00435.11.ls: domain 6 of 9, from 964 to 1075: score 24.4, E = 0.00038 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkql.kH qq+ ++++ l W+ +e L + + d + ++++++l+ + KIAA0796 964 VAVQQLDKNMSSLRTWLAHIESEL-AKPI-VYDSCNSEEIQRKLnEQ 1008 kaleaelaahqdrvealninelaekLiideghyas.....eeiqerleeL ++l+++++ h + v ++ l e L + + ++++ + + iq+ +L KIAA0796 1009 QELQRDIEKHSTGVASVL--NLCEVL-LHDCDACAtdaecDSIQQATRNL 1055 nerWeqLlelaaeRkqkLee<-* ++rW +++++ +eR+ k ee KIAA0796 1056 DRRWRNICAMSMERRLKIEE 1075 PF00435.11.fs: domain 8 of 12, from 964 to 1075: score 22.4, E = 3.7e-06 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkql.kH qq+ ++++ l W+ +e L + + d + ++++++l+ + KIAA0796 964 VAVQQLDKNMSSLRTWLAHIESEL-AKPI-VYDSCNSEEIQRKLnEQ 1008 kaleaelaahqdrvealninelaekLiideghyas.....eeiqerleeL ++l+++++ h + v ++ l e L + + ++++ + + iq+ +L KIAA0796 1009 QELQRDIEKHSTGVASVL--NLCEVL-LHDCDACAtdaecDSIQQATRNL 1055 nerWeqLlelaaeRkqkLee<-* ++rW +++++ +eR+ k ee KIAA0796 1056 DRRWRNICAMSMERRLKIEE 1075 PF00435.11.ls: domain 7 of 9, from 1078 to 1184: score 2.0, E = 0.027 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk l+q+F+ d + +e W+ e+ ++ + g ++ +++ lk k++ KIAA0796 1078 RLWQKFLDDYSRFEDWLKSSERTAAFPSSSGVIYTVAKEELK--KFE 1122 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq a+++ + +++e +n ++ ++L+ ++ +++ +++++ e n+rW++ KIAA0796 1123 AFQRQVHECLTQLELIN--KQYRRLARENRTDSACSLKQMVHEGNQRWDN 1170 LlelaaeRkqkLee<-* L++++ + ++L KIAA0796 1171 LQKRVTSILRRLKH 1184 PF00435.11.fs: domain 10 of 12, from 1187 to 1291: score 25.3, E = 5.4e-07 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk + ++F d ++ W++e++ +L++ ++ ++ +vqa k ++k KIAA0796 1187 GQREEFETARDSILVWLTEMDLQLTNIEH--FSECDVQAKIK--QLK 1229 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq a++ e++ + ++e++ +++e+Li+ +++ ++ i+e l+eL++ ++ KIAA0796 1230 AFQQEISLNHNKIEQII--AQGEQLIEKSEPLDAAIIEEELDELRRYCQE 1277 LlelaaeRkqkLee<-* + ++++ ++kL + KIAA0796 1278 VFGRVERYHKKLIR 1291 PF00435.11.ls: domain 8 of 9, from 1187 to 1291: score 27.2, E = 5.4e-05 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk + ++F d ++ W++e++ +L++ ++ ++ +vqa k ++k KIAA0796 1187 GQREEFETARDSILVWLTEMDLQLTNIEH--FSECDVQAKIK--QLK 1229 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq a++ e++ + ++e++ +++e+Li+ +++ ++ i+e l+eL++ ++ KIAA0796 1230 AFQQEISLNHNKIEQII--AQGEQLIEKSEPLDAAIIEEELDELRRYCQE 1277 LlelaaeRkqkLee<-* + ++++ ++kL + KIAA0796 1278 VFGRVERYHKKLIR 1291 PF00435.11.ls: domain 9 of 9, from 1519 to 1626: score 38.9, E = 1.6e-08 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkql.k +++qqF++d++ + +W+ ++e+ L++ + + + +++q++ q++k KIAA0796 1519 QKWQQFNSDLNSIWAWLGDTEEELeQLQRL--ELSTDIQTIELQIkK 1563 HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW +k+l++ ++ ++ + ++n ++ +++ +s ++q+rl++ n rW KIAA0796 1564 LKELQKAVDHRKAIILSIN--LCSPEF-TQADSKESRDLQDRLSQMNGRW 1610 eqLlelaaeRkqkLee<-* ++++ l++e++ L++ KIAA0796 1611 DRVCSLLEEWRGLLQD 1626 PF00435.11.fs: domain 12 of 12, from 1519 to 1626: score 36.9, E = 1.8e-10 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkql.k +++qqF++d++ + +W+ ++e+ L++ + + + +++q++ q++k KIAA0796 1519 QKWQQFNSDLNSIWAWLGDTEEELeQLQRL--ELSTDIQTIELQIkK 1563 HkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerW +k+l++ ++ ++ + ++n ++ +++ +s ++q+rl++ n rW KIAA0796 1564 LKELQKAVDHRKAIILSIN--LCSPEF-TQADSKESRDLQDRLSQMNGRW 1610 eqLlelaaeRkqkLee<-* ++++ l++e++ L++ KIAA0796 1611 DRVCSLLEEWRGLLQD 1626 //