hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13143743/chunk_1/iprscan-20080502-13143743.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0794
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00789.11.ls UBX domain                                     113.3    6.5e-31   1
PF00789.11.fs UBX domain                                     111.4    7.6e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02809.10.fs   1/1     285   302 ..     1    18 []    12.0    0.066
PF02809.10.ls   1/1     285   302 ..     1    18 []    14.0     0.33
PF00789.11.fs   1/1     408   488 ..     1    92 []   111.4  7.6e-31
PF00789.11.ls   1/1     408   488 ..     1    92 []   113.3  6.5e-31

Alignments of top-scoring domains:
PF02809.10.fs: domain 1 of 1, from 285 to 302: score 12.0, E = 0.066
                   *->mdEEedLqlALalSlqea<-*
                       +E+ +L+ A++ Slqe    
    KIAA0794   285    ASEDSQLEAAIRASLQET    302  

PF02809.10.ls: domain 1 of 1, from 285 to 302: score 14.0, E = 0.33
                   *->mdEEedLqlALalSlqea<-*
                       +E+ +L+ A++ Slqe    
    KIAA0794   285    ASEDSQLEAAIRASLQET    302  

PF00789.11.fs: domain 1 of 1, from 408 to 488: score 111.4, E = 7.6e-31
                   *->skaedvcrlqiRlPDGsrlvrrFnssdklqdvydfVdsnrddadepe
                      ++++++++l++R+PDG+r++++ + ++kl +++++V+s++++++   
    KIAA0794   408    DVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNER-- 452  

                   VyPdYHdyeFsLltnfPRrlltdddesktLkeagllpnstlvlep<-*
                            F+LltnfPRr l+++d++ tL+eagl+p++t+++++   
    KIAA0794   453 ---------FELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE    488  

PF00789.11.ls: domain 1 of 1, from 408 to 488: score 113.3, E = 6.5e-31
                   *->skaedvcrlqiRlPDGsrlvrrFnssdklqdvydfVdsnrddadepe
                      ++++++++l++R+PDG+r++++ + ++kl +++++V+s++++++   
    KIAA0794   408    DVNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNER-- 452  

                   VyPdYHdyeFsLltnfPRrlltdddesktLkeagllpnstlvlep<-*
                            F+LltnfPRr l+++d++ tL+eagl+p++t+++++   
    KIAA0794   453 ---------FELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE    488  

//