hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13124867/chunk_1/iprscan-20080502-13124867.nocrc
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Query sequence: KIAA0793
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00295                                                 233.6    1.7e-65   1
SM00325                                                 215.9    3.7e-60   1
SM00233                                                 148.2    8.5e-40   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00295     1/1      41   235 ..     1   232 []   233.6  1.7e-65
SM00325     1/1     540   726 ..     1   211 []   215.9  3.7e-60
SM00233     1/2     757   855 ..     1    82 []    74.6  1.2e-17
SM00233     2/2     931  1029 ..     1    82 []    73.6  2.5e-17

Alignments of top-scoring domains:
SM00295: domain 1 of 1, from 41 to 235: score 233.6, E = 1.7e-65
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      ++k+++l+V lld+t++ f +++++++++ll +v+++l+l  +e++y
    KIAA0793    41    QEKHLHLRVKLLDNTMEIFDIEPKCDGQVLLTQVWKRLNL--VECDY 85   

                   FgLqfedkdedshWldpaktilkqdvkspksepltlyFRvkFyppdwhgp
                   Fg  f ++ +++ Wl+p k+i +q+++   + + +l + vkF+ppd    
    KIAA0793    86 FGMEFQNTQSYWIWLEPMKPIIRQIRR---PKNVVLRLAVKFFPPD---- 128  

                   peqlkeDptrynllylQvrddilsGrlpcpseeeallLAaLalqaefGdy
                   p+ql+e++try l+ lQ+++d+l++rl+c  + +a+lL +++lq+e Gdy
    KIAA0793   129 PGQLQEEYTRY-LFALQLKRDLLEERLTCA-DTTAALLTSHLLQSEIGDY 176  

                   dpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkewrerI
                   d++           +++l  +++lP q                ++  e+I
    KIAA0793   177 DET---------LDREHLKVNEYLPGQ----------------QHCLEKI 201  

                   velhkehaglspeeaklkYLelarrLpptYGvelF<-*
                   +e+h++h+g++p+e++++ Le+ar+L+ +YG++++   
    KIAA0793   202 LEFHQKHVGQTPAESDFQVLEIARKLE-MYGIRFH    235  

SM00325: domain 1 of 1, from 540 to 726: score 215.9, E = 3.7e-60
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      ++kE+l+TEr+Y++dL++++ +f+ + +ke+       ++   +++l
    KIAA0793   540    IVKEILATERTYLKDLEVITVWFRSAVVKED------AMPATLMTLL 580  

                   FgpNieeiyefHrrFLdeLeerveewl.lskdlKsernsviedsgerigd
                   F+ Ni++iyefHr FL e e+r+++w++ sk       ++ + s++rigd
    KIAA0793   581 FS-NIDPIYEFHRGFLREVEQRLALWEgPSK-------AHTKGSHQRIGD 622  

                   vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies
                   ++l +   ++++k  ++Y ++h++ l  l+k   +k ++++++++ke+e+
    KIAA0793   623 ILLRN---MRQLKEFTSYFQRHDEVLTELEK--ATKRCKKLEAVYKEFEL 667  

                   kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk
                   +++c+      l+L ++L+kP+QRl++Y LLL++l+ h++p+h+d+ d+ 
    KIAA0793   668 QKVCY------LPLNTFLLKPIQRLLHYRLLLRRLCGHYSPGHHDYADCH 711  

                   kAleaikelasqvNe<-*
                   +Al+ai+e+++ ++    
    KIAA0793   712 DALKAITEVTTTLQH    726  

SM00233: domain 1 of 2, from 757 to 855: score 74.6, E = 1.2e-17
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk.......kpkgsip
                      +i+eG L+k++k++ ++r f+Lf+++Lly+ +   ++++ + +g +p
    KIAA0793   757    FIREGCLHKLTKkGLQQRMFFLFSDMLLYTSKGvagtshfRIRGLLP 803  

                   Lsgcsvre.p.......cFeivt.drtlllqAeseeereeWvealqsaia
                   L+g+ v+e++++ + ++cF+i+  ++t++++A++  e+e+W+  l+sai+
    KIAA0793   804 LQGMLVEEsDnewsvphCFTIYAaQKTIVVAASTRLEKEKWMLDLNSAIQ 853  

                   ka<-*
                    a   
    KIAA0793   854 AA    855  

SM00233: domain 2 of 2, from 931 to 1029: score 73.6, E = 2.5e-17
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk...kpkgsipLs
                       +++G+Ll+k +++++w+k ++v++n +L++yk ++++ p  s+pL 
    KIAA0793   931    NQLSGYLLRKFknShGWQKLWVVFTNFCLFFYKTHqddYPLASLPLL 977  

                   gcsvre.p.........cFeivt.drtlllqAeseeereeWvealqsaia
                   g+sv+ + + ++ +++ +F++ +++++++++Aes+ ++e+W+e +q a++
    KIAA0793   978 GYSVSIpReadgihkdyVFKLQFkSHVYFFRAESKYTFERWMEVIQGASS 1027 

                   ka<-*
                   +a   
    KIAA0793  1028 SA    1029 

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