hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13124867/chunk_1/iprscan-20080502-13124867.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0793 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00373.8.fs FERM domain (Band 4.1 family) 198.7 6e-62 1 PF00373.8.ls FERM domain (Band 4.1 family) 200.5 3.7e-57 1 PF00169.19.fs PH domain 128.1 1.5e-38 2 PF00169.19.ls PH domain 132.1 1.4e-36 2 PF00621.11.fs RhoGEF domain 94.1 1.3e-27 1 PF00621.11.ls RhoGEF domain 95.9 1.1e-25 1 PF08736.1.fs FERM adjacent (FA) 72.7 6e-20 1 PF08736.1.ls FERM adjacent (FA) 74.7 2.7e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00373.8.fs 1/1 47 235 .. 1 210 [] 198.7 6e-62 PF00373.8.ls 1/1 47 235 .. 1 210 [] 200.5 3.7e-57 PF08736.1.ls 1/1 331 379 .. 1 50 [] 74.7 2.7e-19 PF08736.1.fs 1/1 331 379 .. 1 50 [] 72.7 6e-20 PF00621.11.fs 1/1 540 726 .. 1 207 [] 94.1 1.3e-27 PF00621.11.ls 1/1 540 726 .. 1 207 [] 95.9 1.1e-25 PF00169.19.fs 1/2 757 853 .. 1 92 [] 61.5 2.9e-18 PF00169.19.ls 1/2 757 853 .. 1 92 [] 63.5 6.3e-16 PF00169.19.ls 2/2 931 1027 .. 1 92 [] 68.6 1.8e-17 PF00169.19.fs 2/2 931 1027 .. 1 92 [] 66.6 8.1e-20 Alignments of top-scoring domains: PF00373.8.fs: domain 1 of 1, from 47 to 235: score 198.7, E = 6e-62 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd +v llD+t+e F +e+k GqvLL +V k L+l E dYFG ++ KIAA0793 47 LRVKLLDNTMEIFDIEPKCDGQVLLTQVWKRLNLVECDYFGMEFQN- 92 DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT + WL+p K+i Q +++ + L + vKF+p+D p +L++e+T KIAA0793 93 ---TQSYWIWLEPMKPIIRQ-IRRPKNVVLRLAVKFFPPD-PGQLQEEYT 137 rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC rylf LQ+k d+le+rl+C tA+LL S Qse GDY+e l KIAA0793 138 RYLFALQLKRDLLEERLTCADTTAALLTSHLLQSEIGDYDETLDREH--- 184 LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk L + lP q + +ekI e H+ H G++p+e ++ L+ KIAA0793 185 ---LKVNEYLP----G--Q---QHCLEKILEFHQKHVGQTPAESDFQVLE 222 iArdLemYGVdff<-* iAr+LemYG+ f+ KIAA0793 223 IARKLEMYGIRFH 235 PF00373.8.ls: domain 1 of 1, from 47 to 235: score 200.5, E = 3.7e-57 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd +v llD+t+e F +e+k GqvLL +V k L+l E dYFG ++ KIAA0793 47 LRVKLLDNTMEIFDIEPKCDGQVLLTQVWKRLNLVECDYFGMEFQN- 92 DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT + WL+p K+i Q +++ + L + vKF+p+D p +L++e+T KIAA0793 93 ---TQSYWIWLEPMKPIIRQ-IRRPKNVVLRLAVKFFPPD-PGQLQEEYT 137 rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC rylf LQ+k d+le+rl+C tA+LL S Qse GDY+e l KIAA0793 138 RYLFALQLKRDLLEERLTCADTTAALLTSHLLQSEIGDYDETLDREH--- 184 LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk L + lP q + +ekI e H+ H G++p+e ++ L+ KIAA0793 185 ---LKVNEYLP----G--Q---QHCLEKILEFHQKHVGQTPAESDFQVLE 222 iArdLemYGVdff<-* iAr+LemYG+ f+ KIAA0793 223 IARKLEMYGIRFH 235 PF08736.1.ls: domain 1 of 1, from 331 to 379: score 74.7, E = 2.7e-19 *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas ++ Ff s+GS+FRYSGRTqkQ+v++ +++g+k++++eR++Sk+++s KIAA0793 331 AKAVFF-SRGSSFRYSGRTQKQLVDYFKDSGMKRIPYERRHSKTHTS 376 rrs<-* +r+ KIAA0793 377 VRA 379 PF08736.1.fs: domain 1 of 1, from 331 to 379: score 72.7, E = 6e-20 *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas ++ Ff s+GS+FRYSGRTqkQ+v++ +++g+k++++eR++Sk+++s KIAA0793 331 AKAVFF-SRGSSFRYSGRTQKQLVDYFKDSGMKRIPYERRHSKTHTS 376 rrs<-* +r+ KIAA0793 377 VRA 379 PF00621.11.fs: domain 1 of 1, from 540 to 726: score 94.1, E = 1.3e-27 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF ++kE+l+TE++Y++dLe + +++ ++++ ++ + +F KIAA0793 540 IVKEILATERTYLKDLEVITVWFRSAVVKED-----AMPATLMTLLF 581 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk sNi iyefhr FL+ + e+r+ ++ e s qr+Gd++l+ KIAA0793 582 SNIDPIYEFHRGFLR-EVEQRLALW--EGPSKAHTKGSHQRIGDILLRN- 627 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd ++l+ +++Y ++++ + + lek +++ ++ + +e e+ + KIAA0793 628 MRQLKEFTSYFQRHDEVLTELEK--ATKRCKKLEAVYKEFELQKVCY--- 672 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda l L ++LlkP+qR+l Y LLL+ L h ++ ++++++d +al+a KIAA0793 673 ----LPLNTFLLKPIQRLLHYRLLLRRLCGHYSP--GHHDYADCHDALKA 716 lqdlaksiNe<-* + ++ + + KIAA0793 717 ITEVTTTLQH 726 PF00621.11.ls: domain 1 of 1, from 540 to 726: score 95.9, E = 1.1e-25 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF ++kE+l+TE++Y++dLe + +++ ++++ ++ + +F KIAA0793 540 IVKEILATERTYLKDLEVITVWFRSAVVKED-----AMPATLMTLLF 581 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk sNi iyefhr FL+ + e+r+ ++ e s qr+Gd++l+ KIAA0793 582 SNIDPIYEFHRGFLR-EVEQRLALW--EGPSKAHTKGSHQRIGDILLRN- 627 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd ++l+ +++Y ++++ + + lek +++ ++ + +e e+ + KIAA0793 628 MRQLKEFTSYFQRHDEVLTELEK--ATKRCKKLEAVYKEFELQKVCY--- 672 davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda l L ++LlkP+qR+l Y LLL+ L h ++ ++++++d +al+a KIAA0793 673 ----LPLNTFLLKPIQRLLHYRLLLRRLCGHYSP--GHHDYADCHDALKA 716 lqdlaksiNe<-* + ++ + + KIAA0793 717 ITEVTTTLQH 726 PF00169.19.fs: domain 1 of 2, from 757 to 853: score 61.5, E = 2.9e-18 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk.....kkpkgsi i+eG+L+k + kk+ ++R f+Lf+d Lly ++ ++++++ +g + KIAA0793 757 FIREGCLHKLT-KKGLQQRMFFLFSDMLLYTSKGVagtshFRIRGLL 802 pLsgiqvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsa pL+g+ v++ ++ ++cF i ++ t++++a++ e+++W+ +++sa KIAA0793 803 PLQGMLVEESDNEwSVPHCFTIYAaQK-TIVVAASTRLEKEKWMLDLNSA 851 ir<-* i KIAA0793 852 IQ 853 PF00169.19.ls: domain 1 of 2, from 757 to 853: score 63.5, E = 6.3e-16 *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk.....kkpkgsi i+eG+L+k + kk+ ++R f+Lf+d Lly ++ ++++++ +g + KIAA0793 757 FIREGCLHKLT-KKGLQQRMFFLFSDMLLYTSKGVagtshFRIRGLL 802 pLsgiqvtkvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsa pL+g+ v++ ++ ++cF i ++ t++++a++ e+++W+ +++sa KIAA0793 803 PLQGMLVEESDNEwSVPHCFTIYAaQK-TIVVAASTRLEKEKWMLDLNSA 851 ir<-* i KIAA0793 852 IQ 853 PF00169.19.ls: domain 2 of 2, from 931 to 1027: score 68.6, E = 1.8e-17 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs +G+Ll+k + +w+k ++v+++ +L++yk +++ p s+pL KIAA0793 931 NQLSGYLLRKFkNSHGWQKLWVVFTNFCLFFYKTHQdDYPLASLPLL 977 giqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkaiqsai g++v ++ + ++ ++++F++ ++++ +++++aes+ ++W++ iq a+ KIAA0793 978 GYSVSIPREAdgiHKDYVFKLQFkSH-VYFFRAESKYTFERWMEVIQGAS 1026 r<-* + KIAA0793 1027 S 1027 PF00169.19.fs: domain 2 of 2, from 931 to 1027: score 66.6, E = 8.1e-20 *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk.kkpkgsipLs +G+Ll+k + +w+k ++v+++ +L++yk +++ p s+pL KIAA0793 931 NQLSGYLLRKFkNSHGWQKLWVVFTNFCLFFYKTHQdDYPLASLPLL 977 giqvtkvpdn...krkncFeirt.dretlllqaeseeerkeWvkaiqsai g++v ++ + ++ ++++F++ ++++ +++++aes+ ++W++ iq a+ KIAA0793 978 GYSVSIPREAdgiHKDYVFKLQFkSH-VYFFRAESKYTFERWMEVIQGAS 1026 r<-* + KIAA0793 1027 S 1027 //