hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13092886/chunk_1/iprscan-20080502-13092886.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0791 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03177.5.fs Non-repetitive/WGA-negative nucleoporin 2872.5 0 1 PF03177.5.ls Non-repetitive/WGA-negative nucleoporin 2847.9 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03177.5.ls 1/1 2 1350 .. 1 1509 [] 2847.9 0 PF03177.5.fs 1/1 21 1350 .. 43 1509 .] 2872.5 0 Alignments of top-scoring domains: PF03177.5.ls: domain 1 of 1, from 2 to 1350: score 2847.9, E = 0 *->ktSglalsepLelAgklidrllqkDRNtPvLdEltyvSkhnraTvSG + + + +A+++ S +TvSG KIAA0791 2 --LWHCWLHFWRTASSF-------------------FSD--NPTVSG 25 lddndyqekggLgaDfTPflkQivTnrkSAIPdEiSWLeefstikvkadM ++d+dy+++g++++ ++P+l++i+ +r+ P E+ e+f + ++ ++M KIAA0791 26 MSDMDYPLQGPGLL-SVPNLPEISSIRRVPLPPEL--VEQFGHMQCNCMM 72 GiFPElnRaWlTIDsklilWNiNntrdyayvDglsHTIlkVgLVKPKPgt G+FP+++RaWlTIDs++++WN+++++d+ay+Dgls+TIl+VgLVKPK+g+ KIAA0791 73 GVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVGLVKPKAGI 122 FVpdVkhLLvlaTpvdiviLgiSfdestYnElqifNRtslvvgvqgldDP F+p+V+hLLvlaTpvdiviLg+S+++ + ++++++N +sl++g q+l+DP KIAA0791 123 FQPHVRHLLVLATPVDIVILGLSYANLQ-TGSGVLN-DSLSGGMQLLPDP 170 LYSLPtDNtvsvIisserdGRIFlaGkdgGlclyElaYqaeedWFnsrCk LYSLPtDNt++++i+s+++GRIFlaGkdg clyE+aYqae++WF++rC+ KIAA0791 171 LYSLPTDNTYLLTITSTDNGRIFLAGKDG--CLYEVAYQAEAGWFSQRCR 218 KInLsKSsLsyLvPslLkvtipgvdlIQkllEDnsnGdaGfeddpIeQlE KIn+sKSsLs+LvPslL++t+++ ddpI Q+ KIAA0791 219 KINHSKSSLSFLVPSLLQFTFSE-------------------DDPILQIA 249 IDnSRgiLYtLSeKgvIraYdItedgLeGpvriesasqnrIvnaagskaa IDnSR+iLYt+SeKgvI++Yd+++dg +G++r++s+sqn+Iv aag++a+ KIAA0791 250 IDNSRNILYTRSEKGVIQVYDLGQDG-QGMSRVASVSQNAIVSAAGNIAR 298 tidrsvfkkIvkIasisaeEnndLfLvAvTqaGVRLYFstsSLNVKqqFG tidrsvfk+Iv+Ia+i+++E++d++L+AvT+aGVRLYFst+ KIAA0791 299 TIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTC--------- 339 PAVPCSPGENtGFGqPAVqPplRqniealktLkLehVrlPPgsvasatve p+Rq++++++tL+L+hVrlPPg++as+tve KIAA0791 340 --------------------PFRQPLARPNTLTLVHVRLPPGFSASSTVE 369 kELpkqvhealyssgillmtaleqhdqdlLwsqkkssvvleTtlaeTiis k p++vh alys+gillm a+e++d+d+Lw++++++++++++++eT+++ KIAA0791 370 K--PSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQMT 417 pgidgvsvalsavdelkvdKkEnssvigitnKallesaeepPvtLvhkly g+dg+s+alsa+delkvdK +i+++nK++++++++p v++++ KIAA0791 418 AGVDGHSWALSAIDELKVDK-----IITPLNKDHIPITDSP----VVVQQ 458 vsvPdykilllsgkgvenielLktvDelrqIlpssngfnaeevpqfFane +++P++k++lls++g++++++L++vD+lr++l+s++g+++ee+++fF+++ KIAA0791 459 HMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLH 508 fadQacataLklAvsTsaaleivaywapdafFeyggEPCYnplpFvaayg ++dQacat+L+lA+sT+a++++v++wa++afF+yggE ++++F+ +++ KIAA0791 509 QEDQACATCLILACSTAACDREVSAWATRAFFRYGGE---AQMRFPTTLP 555 taeAcsTaLfvtcksnkseklkSsalaplSlGiPgVgeikPkfsrpssst +++++++L+++ +s+++++ +S++++p+ lG+P++g ++P +s+p+ KIAA0791 556 PPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQPPAMSTPVC-- 603 vssLLSkPvgntAttnLmQalqafskSgPAnkEDleldeIVlSpkfyGia + gn +a qa S +++eIV+S+k++Gi+ KIAA0791 604 -------ALGN-------PATQATNMSC------VTGPEIVYSGKHNGIC 633 lyisRllsdIWdarvvvertDnRvtsHvFkSssdPitPsikeekadelSd +y+sR++++IWda++vver +FkS + +e++a+e+S KIAA0791 634 IYFSRIMGNIWDASLVVER--------IFKSGN-------REITAIESS- 667 lRslrskvsievdlvEyyLSsikVvLdeFldRtssySiislgnPlllake ++ +l+E++L+++k +L+eFldR+s++ +++lgnP+++ak+ KIAA0791 668 ---------VPCQLLESVLQELK-GLQEFLDRNSQFAGGPLGNPNTTAKV 707 qnrllivvlsEqAntaEsialnAlillvksikEklSLlNilyeerkSYqA q+rl++ +++E++n +++++++++++++++++Ek+SL++i++++rkSYqA KIAA0791 708 QQRLIGFMRPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQLVRKSYQA 757 LveafkllehsFkvIvgelskevQkqLvkltFkDLfipndKTKevikell L+++++l+eh+F+ Iv el+ke Q+qL+++tFkDL+i+ Ke++++l+ KIAA0791 758 LALWKLLCEHQFTIIVAELQKELQEQLKITTFKDLVIRD---KELTGALI 804 iSlINlyIkdgAsvdyiskaLqErCpslysaeDivcykAtElLerAkeve +SlIN+yI+d+A+vd+is++Lq+ Cp+lys++D++c+kA+ElL+r+++v+ KIAA0791 805 ASLINCYIRDNAAVDGISLHLQDICPLLYSTDDAICSKANELLQRSRQVQ 854 liskkekermLrtalklyekiaedlelvdLksvvaqmisvnfyegvvEls +k+ekermLr++lk+y+ki++ +vdL v+aq+++v+fyegvvEls KIAA0791 855 --NKTEKERMLRESLKEYQKISN---QVDLSNVCAQYRQVRFYEGVVELS 899 LtiAeKkDkgelglhfyknGepeeDrrGkqtfdkRinvYklvfdtLkevd Lt+AeKkD+++lglhfyk+GepeeD +G+q f++R+n+Yk+++dtL+e++ KIAA0791 900 LTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELV 949 erskaktHVQSpSinnkkGPPVLSsdkiSisneeAtklkekvyklalksk ++ska++ QSpS+++k+GPPVLSsd++++sneeA++++e+++kl ++sk KIAA0791 950 NQSKAAP--QSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSK 997 DrLFHialYdWLvaadredkLLdiesPFllPyLkrkAkksvdrvkisdLL D+LF+ialY+WL++ d++dkLL+++sPFl+P+L+r+Ak++++rv+++dLL KIAA0791 998 DELFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAKVDQNRVRYMDLL 1047 WkYYeKnshFseAAevLykLAssrSfdIkLeqRIEyLaRAnglckSstal W+YYeKn++Fs AA+vL++LA+++S++I+L+qR+Ey+aRA++++kSsta+ KIAA0791 1048 WRYYEKNRSFSNAARVLSRLADMHSTEISLQQRLEYIARAILSAKSSTAI 1097 SskaadgqllkeledkldvArIQkdiLelvqeeasidsevkdalkkeLdg Ss+aadg++l+ele+k++vArIQ++i+e++q+++s++s+v+da++ +Ld+ KIAA0791 1098 SSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHSSVQDAVS-QLDS 1146 kllditeLyndFAdPldlyEikLaIfkcadfkDpllIeskWdelieSlkl +l+dit+Ly++FAdP++l+E+kLaI++ca+++Dp+l++++W+++ie+ +l KIAA0791 1147 ELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQDIIEK-EL 1195 sdsvtgsssdrmnfLslksnvLikIykevrDsevvFPlaFLvreleekfc sdsvt+sssdrm++Lslk+++L+kIy++ ++++FPl+F+v++le+++c KIAA0791 1196 SDSVTLSSSDRMHALSLKIVLLGKIYAG---TPRFFPLDFIVQFLEQQVC 1242 etLPKlriaeGsVvsifveaGVslekLleiysrlIesrdrvWnsegnelh + l++++G+V+++++e+GV+l++Lle+y++l++srd++Wn+ + +lh KIAA0791 1243 T----LNWDVGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPFWNRMKKPLH 1288 llkemvwLikewyendslvlyrekRrfrgliadavigkLeeyksksDpVe ll+++++L+ +++en+s vl++e+Rrf++l++dav+g+L+e++s+s++V+ KIAA0791 1289 LLDCIHVLLIRYVENPSQVLNCERRRFTNLCLDAVCGYLVELQSMSSSVA 1338 kyvkdGslkeLq<-* +++++G++k+Lq KIAA0791 1339 VQAITGNFKSLQ 1350 PF03177.5.fs: domain 1 of 1, from 21 to 1350: score 2872.5, E = 0 *->aTvSGlddndyqekggLgaDfTPflkQivTnrkSAIPdEiSWLeefs +TvSG++d+dy+++g++++ ++P+l++i+ +r+ P E+ e+f KIAA0791 21 PTVSGMSDMDYPLQGPGLL-SVPNLPEISSIRRVPLPPEL--VEQFG 64 tikvkadMGiFPElnRaWlTIDsklilWNiNntrdyayvDglsHTIlkVg + ++ ++MG+FP+++RaWlTIDs++++WN+++++d+ay+Dgls+TIl+Vg KIAA0791 65 HMQCNCMMGVFPPISRAWLTIDSDIFMWNYEDGGDLAYFDGLSETILAVG 114 LVKPKPgtFVpdVkhLLvlaTpvdiviLgiSfdestYnElqifNRtslvv LVKPK+g+F+p+V+hLLvlaTpvdiviLg+S+++ + ++++++N +sl++ KIAA0791 115 LVKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQ-TGSGVLN-DSLSG 162 gvqgldDPLYSLPtDNtvsvIisserdGRIFlaGkdgGlclyElaYqaee g q+l+DPLYSLPtDNt++++i+s+++GRIFlaGkdg clyE+aYqae+ KIAA0791 163 GMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDG--CLYEVAYQAEA 210 dWFnsrCkKInLsKSsLsyLvPslLkvtipgvdlIQkllEDnsnGdaGfe +WF++rC+KIn+sKSsLs+LvPslL++t+++ KIAA0791 211 GWFSQRCRKINHSKSSLSFLVPSLLQFTFSE------------------- 241 ddpIeQlEIDnSRgiLYtLSeKgvIraYdItedgLeGpvriesasqnrIv ddpI Q+ IDnSR+iLYt+SeKgvI++Yd+++dg +G++r++s+sqn+Iv KIAA0791 242 DDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDG-QGMSRVASVSQNAIV 290 naagskaatidrsvfkkIvkIasisaeEnndLfLvAvTqaGVRLYFstsS aag++a+tidrsvfk+Iv+Ia+i+++E++d++L+AvT+aGVRLYFst+ KIAA0791 291 SAAGNIARTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTC- 339 LNVKqqFGPAVPCSPGENtGFGqPAVqPplRqniealktLkLehVrlPPg p+Rq++++++tL+L+hVrlPPg KIAA0791 340 ----------------------------PFRQPLARPNTLTLVHVRLPPG 361 svasatvekELpkqvhealyssgillmtaleqhdqdlLwsqkkssvvleT ++as+tvek p++vh alys+gillm a+e++d+d+Lw+++++++++++ KIAA0791 362 FSASSTVEK--PSKVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQK 409 tlaeTiispgidgvsvalsavdelkvdKkEnssvigitnKallesaeepP +++eT+++ g+dg+s+alsa+delkvdK +i+++nK++++++++p KIAA0791 410 PMMETQMTAGVDGHSWALSAIDELKVDK-----IITPLNKDHIPITDSP- 453 vtLvhklyvsvPdykilllsgkgvenielLktvDelrqIlpssngfnaee v+++++++P++k++lls++g++++++L++vD+lr++l+s++g+++ee KIAA0791 454 ---VVVQQHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEE 500 vpqfFanefadQacataLklAvsTsaaleivaywapdafFeyggEPCYnp +++fF+++++dQacat+L+lA+sT+a++++v++wa++afF+yggE ++ KIAA0791 501 IERFFKLHQEDQACATCLILACSTAACDREVSAWATRAFFRYGGE---AQ 547 lpFvaaygtaeAcsTaLfvtcksnkseklkSsalaplSlGiPgVgeikPk ++F+ +++ +++++++L+++ +s+++++ +S++++p+ lG+P++g ++P KIAA0791 548 MRFPTTLPPPSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQPPA 597 fsrpssstvssLLSkPvgntAttnLmQalqafskSgPAnkEDleldeIVl +s+p+ + gn +a qa S +++eIV+ KIAA0791 598 MSTPVC---------ALGN-------PATQATNMSC------VTGPEIVY 625 SpkfyGialyisRllsdIWdarvvvertDnRvtsHvFkSssdPitPsike S+k++Gi++y+sR++++IWda++vver +FkS + +e KIAA0791 626 SGKHNGICIYFSRIMGNIWDASLVVER--------IFKSGN-------RE 660 ekadelSdlRslrskvsievdlvEyyLSsikVvLdeFldRtssySiislg ++a+e+S ++ +l+E++L+++k +L+eFldR+s++ +++lg KIAA0791 661 ITAIESS----------VPCQLLESVLQELK-GLQEFLDRNSQFAGGPLG 699 nPlllakeqnrllivvlsEqAntaEsialnAlillvksikEklSLlNily nP+++ak+q+rl++ +++E++n +++++++++++++++++Ek+SL++i++ KIAA0791 700 NPNTTAKVQQRLIGFMRPENGNPQQMQQELQRKFHEAQLSEKISLQAIQQ 749 eerkSYqALveafkllehsFkvIvgelskevQkqLvkltFkDLfipndKT ++rkSYqAL+++++l+eh+F+ Iv el+ke Q+qL+++tFkDL+i+ KIAA0791 750 LVRKSYQALALWKLLCEHQFTIIVAELQKELQEQLKITTFKDLVIRD--- 796 KevikelliSlINlyIkdgAsvdyiskaLqErCpslysaeDivcykAtEl Ke++++l++SlIN+yI+d+A+vd+is++Lq+ Cp+lys++D++c+kA+El KIAA0791 797 KELTGALIASLINCYIRDNAAVDGISLHLQDICPLLYSTDDAICSKANEL 846 LerAkeveliskkekermLrtalklyekiaedlelvdLksvvaqmisvnf L+r+++v+ +k+ekermLr++lk+y+ki++ +vdL v+aq+++v+f KIAA0791 847 LQRSRQVQ--NKTEKERMLRESLKEYQKISN---QVDLSNVCAQYRQVRF 891 yegvvElsLtiAeKkDkgelglhfyknGepeeDrrGkqtfdkRinvYklv yegvvElsLt+AeKkD+++lglhfyk+GepeeD +G+q f++R+n+Yk++ KIAA0791 892 YEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCI 941 fdtLkevderskaktHVQSpSinnkkGPPVLSsdkiSisneeAtklkekv +dtL+e++++ska++ QSpS+++k+GPPVLSsd++++sneeA++++e++ KIAA0791 942 TDTLQELVNQSKAAP--QSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQM 989 yklalkskDrLFHialYdWLvaadredkLLdiesPFllPyLkrkAkksvd +kl ++skD+LF+ialY+WL++ d++dkLL+++sPFl+P+L+r+Ak++++ KIAA0791 990 LKLSQRSKDELFSIALYNWLIQVDLADKLLQVASPFLEPHLVRMAKVDQN 1039 rvkisdLLWkYYeKnshFseAAevLykLAssrSfdIkLeqRIEyLaRAng rv+++dLLW+YYeKn++Fs AA+vL++LA+++S++I+L+qR+Ey+aRA++ KIAA0791 1040 RVRYMDLLWRYYEKNRSFSNAARVLSRLADMHSTEISLQQRLEYIARAIL 1089 lckSstalSskaadgqllkeledkldvArIQkdiLelvqeeasidsevkd ++kSsta+Ss+aadg++l+ele+k++vArIQ++i+e++q+++s++s+v+d KIAA0791 1090 SAKSSTAISSIAADGEFLHELEEKMEVARIQLQIQETLQRQYSHHSSVQD 1139 alkkeLdgkllditeLyndFAdPldlyEikLaIfkcadfkDpllIeskWd a++ +Ld++l+dit+Ly++FAdP++l+E+kLaI++ca+++Dp+l++++W+ KIAA0791 1140 AVS-QLDSELMDITKLYGEFADPFKLAECKLAIIHCAGYSDPILVQTLWQ 1188 elieSlklsdsvtgsssdrmnfLslksnvLikIykevrDsevvFPlaFLv ++ie+ +lsdsvt+sssdrm++Lslk+++L+kIy++ ++++FPl+F+v KIAA0791 1189 DIIEK-ELSDSVTLSSSDRMHALSLKIVLLGKIYAG---TPRFFPLDFIV 1234 releekfcetLPKlriaeGsVvsifveaGVslekLleiysrlIesrdrvW ++le+++c+ l++++G+V+++++e+GV+l++Lle+y++l++srd++W KIAA0791 1235 QFLEQQVCT----LNWDVGFVIQTMNEIGVPLPRLLEVYDQLFKSRDPFW 1280 nsegnelhllkemvwLikewyendslvlyrekRrfrgliadavigkLeey n+ + +lhll+++++L+ +++en+s vl++e+Rrf++l++dav+g+L+e+ KIAA0791 1281 NRMKKPLHLLDCIHVLLIRYVENPSQVLNCERRRFTNLCLDAVCGYLVEL 1330 ksksDpVekyvkdGslkeLq<-* +s+s++V++++++G++k+Lq KIAA0791 1331 QSMSSSVAVQAITGNFKSLQ 1350 //