hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13060801/chunk_1/iprscan-20080502-13060801.nocrc
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Query sequence: KIAA0789
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00321                                                 320.6    1.1e-91   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00321    1/2     182   274 ..     1   103 []   165.6    5e-45
SM00321    2/2     285   379 ..     1   103 []   155.0  7.6e-42

Alignments of top-scoring domains:
SM00321: domain 1 of 2, from 182 to 274: score 165.6, E = 5e-45
                   *->gatYvGCysdddvssrtlaakssyayhsSnmsveaCYqnfCaskGya
                      +a+Y+GCy+dd+ +sr+l+++s+++y++  m++++C q++Ca++Gy 
    KIAA0789   182    RAKYIGCYLDDT-QSRALRGVSFFDYKK--MTIFRC-QDNCAERGYL 224  

                   lAaLengneCYCGdslpstsvsdeddssqCstkCsGplypaevCGGpsrl
                   +++Le+g+eCYCG+++++t+vs    +++C+++C+G  ++++vCGG +rl
    KIAA0789   225 YGGLEFGAECYCGHKIQATNVS----EAECDMECKG--ERGSVCGGANRL 268  

                   svYvla<-*
                   svY+l+   
    KIAA0789   269 SVYRLQ    274  

SM00321: domain 2 of 2, from 285 to 379: score 155.0, E = 7.6e-42
                   *->gatYvGCysdddvssrtlaakssyayhsSnmsveaCYqnfCaskGya
                      +a+++GC++++  ++++la+++++a+++  msv++C  +fC++k+y+
    KIAA0789   285    SAVFRGCFRRP--DNLSLALPVTAAMLN--MSVDKC-VDFCTEKEYP 326  

                   lAaLengneCYCGdslpstsvsdeddssqCstkCsGplypaevCGGpsrl
                   lAaL+ g++C+CG+++++++++d++d+++C++kCs+  +++e+CG+ps++
    KIAA0789   327 LAALA-GTACHCGFPTTRFPLHDREDEQLCAQKCSA--EEFESCGTPSYF 373  

                   svYvla<-*
                   +vY+++   
    KIAA0789   374 IVYQTQ    379  

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