hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13060801/chunk_1/iprscan-20080502-13060801.nocrc
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Query sequence: KIAA0789
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01822.10.fs WSC domain                                     221.1    7.3e-72   2
PF01822.10.ls WSC domain                                     224.9    1.7e-64   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01822.10.fs   1/2     185   264 ..     1    87 []   122.3  1.1e-39
PF01822.10.ls   1/2     185   264 ..     1    87 []   124.2  3.3e-34
PF01822.10.fs   2/2     288   369 ..     1    87 []    98.7  5.1e-32
PF01822.10.ls   2/2     288   369 ..     1    87 []   100.7  4.1e-27

Alignments of top-scoring domains:
PF01822.10.fs: domain 1 of 2, from 185 to 264: score 122.3, E = 1.1e-39
                   *->YlGCysdnsngpartlaaqtygdg.dmTveaCqafCasaGyayAGle
                      Y+GCy d++ +  r+l++ +++d+++mT+  Cq++Ca++Gy y+Gle
    KIAA0789   185    YIGCYLDDTQS--RALRGVSFFDYkKMTIFRCQDNCAERGYLYGGLE 229  

                   yggeCyCGnslpsgtgpatkvdesqCnmtCaGdppseiCGG<-*
                   +g eCyCG++++     at v+e++C+m C+G+   ++CGG   
    KIAA0789   230 FGAECYCGHKIQ-----ATNVSEAECDMECKGE-RGSVCGG    264  

PF01822.10.ls: domain 1 of 2, from 185 to 264: score 124.2, E = 3.3e-34
                   *->YlGCysdnsngpartlaaqtygdg.dmTveaCqafCasaGyayAGle
                      Y+GCy d++ +  r+l++ +++d+++mT+  Cq++Ca++Gy y+Gle
    KIAA0789   185    YIGCYLDDTQS--RALRGVSFFDYkKMTIFRCQDNCAERGYLYGGLE 229  

                   yggeCyCGnslpsgtgpatkvdesqCnmtCaGdppseiCGG<-*
                   +g eCyCG++++     at v+e++C+m C+G+   ++CGG   
    KIAA0789   230 FGAECYCGHKIQ-----ATNVSEAECDMECKGE-RGSVCGG    264  

PF01822.10.fs: domain 2 of 2, from 288 to 369: score 98.7, E = 5.1e-32
                   *->YlGCysdnsngpartlaaqtygdgdmTveaCqafCasaGyayAGley
                      ++GC++  +n ++++   +++ +  m+v++C++fC++++y++A+l  
    KIAA0789   288    FRGCFRRPDNLSLALPVTAAMLN--MSVDKCVDFCTEKEYPLAALA- 331  

                   ggeCyCGnslpsgtgpatkvdesqCnmtCaGdppseiCGG<-*
                   g++C+CG + ++++  +   de++C ++C+ + + e CG    
    KIAA0789   332 GTACHCGFPTTRFPL-HDREDEQLCAQKCSAE-EFESCGT    369  

PF01822.10.ls: domain 2 of 2, from 288 to 369: score 100.7, E = 4.1e-27
                   *->YlGCysdnsngpartlaaqtygdgdmTveaCqafCasaGyayAGley
                      ++GC++  +n ++++   +++ +  m+v++C++fC++++y++A+l  
    KIAA0789   288    FRGCFRRPDNLSLALPVTAAMLN--MSVDKCVDFCTEKEYPLAALA- 331  

                   ggeCyCGnslpsgtgpatkvdesqCnmtCaGdppseiCGG<-*
                   g++C+CG + ++++  +   de++C ++C+ + + e CG    
    KIAA0789   332 GTACHCGFPTTRFPL-HDREDEQLCAQKCSAE-EFESCGT    369  

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