hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13041680/chunk_1/iprscan-20080502-13041680.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0788 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00611 1108.6 0 2 SM00487 237.2 1.4e-66 2 SM00490 120.6 1.7e-31 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00487 1/2 367 580 .. 1 219 [] 116.9 2.3e-30 SM00490 1/2 658 750 .. 1 86 [] 72.8 4.1e-17 SM00611 1/2 868 1177 .. 1 411 [] 556.6 9.5e-163 SM00487 2/2 1214 1418 .. 1 219 [] 120.3 2.1e-31 SM00490 2/2 1497 1585 .. 1 86 [] 47.8 1.5e-09 SM00611 2/2 1699 2015 .. 1 411 [] 551.9 2.5e-161 Alignments of top-scoring domains: SM00487: domain 1 of 2, from 367 to 580: score 116.9, E = 2.3e-30 *->gf.klrpyQkeaipwlleg.rdvilaapTGsGKTlafllpllellkk gf++l+ +Q + +++le +++++l+apTG+GKT ++l +l+ + k KIAA0788 367 GFkTLNRIQSKLYRAALETdENLLLCAPTGAGKTNVALMCMLREIGK 413 gkplas.kkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvv + +++ + + ++ ++++++P r+L++ ++ + k++ +g ++v KIAA0788 414 HINMDGtINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYG-------ITV 456 glygGsktkekeqlrklksgktdilvtTpgrLldll.ngkg.lsl.nldl + ++G ++ql k + +t+i+v+Tp+++ ++g + + + ++l KIAA0788 457 AELTG-----DHQLCKEEISATQIIVCTPEKWDIITrKGGErTYTqLVRL 501 vilDEaHrlldmgsggdhgfgdqle.llkrl.......pknrqrlllSAT +ilDE+H l d ++g++le l+ r ++ + +++++++lSAT KIAA0788 502 IILDEIHLLHD-------DRGPVLEaLVARAirniemtQEDVRLIGLSAT 544 pp.eienllklflnlpelfpnpvfisvgf..tlepieqf<-* +p+ + ++ l ++++ ++ +f++++++ +++ KIAA0788 545 LPnYEDVATFLRVDPA---KGLFYFDNSFrpVPLEQTYV 580 SM00490: domain 1 of 2, from 658 to 750: score 72.8, E = 4.1e-17 *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva + +Lk ll +++a++H+g+++ +R+ +++ F + i+vLv+ KIAA0788 658 QCKNLELKDLL---PYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVS 701 TdvaerGlDipgvdlVInydl...........pwspasyiQRiGRaGRaG T ++++G+++p +++VI+ + + ++++++ + ++ + +Q+ GRaGR+ KIAA0788 702 TATLAWGVNLP-AHTVIIKGTqvyspekgrwtELGALDILQMLGRAGRPQ 750 <-* KIAA0788 - - SM00611: domain 1 of 2, from 868 to 1177: score 556.6, E = 9.5e-163 *->diaptdLGRIASyYvYisytTietfnellkptmslkdlLeilSdasE +++t+LGRIAS+Y Yi+++T++t+n+llkpt+s+++l++++S +sE KIAA0788 868 NFQVTELGRIASHY-YITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 913 FdkqYNkevqeqlpvRheEdkeLeeLaerlpikiellekknpslddphvK F+ +++vR+eE++eL++L+er+pi+++ +s+++p++K KIAA0788 914 FK---------NITVREEEKLELQKLLERVPIPVK------ESIEEPSAK 948 anlLLQAhlSRlkllpfaLvsDtkyVlqnagRLlqAmvdialergwlslh +n+LLQA++S+lkl++faL++D++yV+q+agRL++A+++i+l+rgw++l KIAA0788 949 INVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQL- 997 rkvrtalnalnLsqMitQalWefdrelsPLlQLPhlpedllkrlekskqi ++++lnL++Mi++++W+++ +PL+Q+ +lpe+++k++ek KIAA0788 998 -----TDKTLNLCKMIDKRMWQSM---CPLRQFRKLPEEVVKKIEK---- 1035 mkkkkvlsvedLleLeedeergellhsldeLsekegedvykflsrlPkin k++++e+L++L + e+gel++++ k+g++++k+++ +Pk++ KIAA0788 1036 ----KNFPFERLYDLN-HNEIGELIRMP-----KMGKTIHKYVHLFPKLE 1075 ieislepideedvtrvvlgvevtltvdltwddrvhgkegklaldqkveed ++++l+pi tr++l+ve+t+t+d+ wd++vhg+ KIAA0788 1076 LSVHLQPI-----TRSTLKVELTITPDFQWDEKVHGS------------- 1107 edDeadskelrlqrlnvrereeggkvtgpvhapkfPkeKsEgwWlvieds sE++W+++ed+ KIAA0788 1108 ---------------------------------------SEAFWILVEDV 1118 dsnkeLLhierfvlnkkrvsseeehkldFtaPaeeggqLppqytlrlvSD ds+ +Lh+e+f+l++k+ + +eh + F++P++e+ Lppqy++r+vSD KIAA0788 1119 DSE-VILHHEYFLLKAKYAQ--DEHLITFFVPVFEP--LPPQYFIRVVSD 1163 sylGadqevplsfn<-* ++l++++++p+sf+ KIAA0788 1164 RWLSCETQLPVSFR 1177 SM00487: domain 2 of 2, from 1214 to 1418: score 120.3, E = 2.1e-31 *->gf.klrpyQkeaipwlleg.rdvilaapTGsGKTlafllpllellkk +f+ ++p+Q ++++ +++ + +v + apTGsGKT+++ +++l+ l++ KIAA0788 1214 KFpFFNPIQTQVFNTVYNSdDNVFVGAPTGSGKTICAEFAILRMLLQ 1260 gkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvg ++ +r+++++P +LaeQ++ + + +++ k+v+ KIAA0788 1261 SS--------EGRCVYITPMEALAEQVYMDWYEKFQDRL------NKKVV 1296 lygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkg.lsl.nldl l++G++ +l+ l +g +i++ Tp+++ l ++ k++ + +n++l KIAA0788 1297 LLTGeT----STDLKLLGKG--NIIISTPEKWDILSrRWKQrKNVqNINL 1340 vilDEaHrlldmgsggdhgfgdqle.llkrl.......pknrqrlllSAT +++DE+H + + +g++le +++r++ +++ ++ +++++lS KIAA0788 1341 FVVDEVHLIGG-------ENGPVLEvICSRMryissqiERPIRIVALSSS 1383 pp.eienllklflnlpelfpnpvfisvgf....tlepieqf<-* ++++ + + +l ++ + +++ ++ +++++++++ KIAA0788 1384 LSnAKDVAHWLGCS------ATSTFNFHPnvrpVPLELHIQ 1418 SM00490: domain 2 of 2, from 1497 to 1585: score 47.8, E = 1.5e-09 *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva +l+e L + v++lH gls+ eR+ +++ F +g i+v+va KIAA0788 1497 STLKETLLNG-------VGYLHEGLSPMERRLVEQLFSSGAIQVVVA 1536 TdvaerGlDipgvdlVInydl...........pwspasyiQRiGRaGRaG ++ + +G ++ ++lVI++d + +++ + + + + +Q++G a R+ KIAA0788 1537 SRSLCWGMNVA-AHLVIIMDTqyyngkihayvDYPIYDVLQMVGHANRPL 1585 <-* KIAA0788 - - SM00611: domain 2 of 2, from 1699 to 2015: score 551.9, E = 2.5e-161 *->diaptdLGRIASyYvYisytTietfnellkptmslkdlLeilSdasE d+ap++LG+IA+yY Yi+ytTie+f+++l +++++++l+ei+S a+E KIAA0788 1699 DVAPLNLGMIAAYY-YINYTTIELFSMSLNAKTKVRGLIEIISNAAE 1744 FdkqYNkevqeqlpvRheEdkeLeeLaerlpikiellekknpslddphvK ++ ++p+Rh+Ed +L++La+++p+k++ np++ dphvK KIAA0788 1745 YE---------NIPIRHHEDNLLRQLAQKVPHKLN-----NPKFNDPHVK 1780 anlLLQAhlSRlkllpfaLvsDtkyVlqnagRLlqAmvdialergwlslh +nlLLQAhlSR+ l+++L+sDt+ +l +a+RL+qA+vd+++++gwls+ KIAA0788 1781 TNLLLQAHLSRM-QLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSP- 1828 rkvrtalnalnLsqMitQalWefdrelsPLlQLPhlpedllkrlekskqi al+a++L+qM+tQa+W++d s+L+QLPh++++++kr+++ KIAA0788 1829 -----ALAAMELAQMVTQAMWSKD---SYLKQLPHFTSEHIKRCTD---- 1866 mkkkkvlsvedLleLeedeergellhsldeLsekegedvykflsrlPkin k+v+sv+d++e+e deer ll+++d ++++dv++f++r+P+i+ KIAA0788 1867 ---KGVESVFDIMEME-DEERNALLQLTD----SQIADVARFCNRYPNIE 1908 ieislepideedvtrvvlgvevtltvdltwddrvhgkegklaldqkveed +++++++ +++ +g +v++ v+l+++++ KIAA0788 1909 LSYEVVDK-----DSIRSGGPVVVLVQLEREEE----------------- 1936 edDeadskelrlqrlnvrereeggkvtgpvhapkfPkeKsEgwWlvieds vtgpv+ap+fP++++EgwW+vi+d KIAA0788 1937 -------------------------VTGPVIAPLFPQKREEGWWVVIGDA 1961 dsnkeLLhierfvlnkkrvsseeehkldFtaPaeeggqLppqytlrlvSD +sn +L++i+r++l++k ++kldF+aPa++ ++ytl+++SD KIAA0788 1962 KSN-SLISIKRLTLQQKA-----KVKLDFVAPATG----AHNYTLYFMSD 2001 sylGadqevplsfn<-* +y+G+dqe+ +s++ KIAA0788 2002 AYMGCDQEYKFSVD 2015 //