hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13041680/chunk_1/iprscan-20080502-13041680.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0788 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02889.7.ls Sec63 Brl domain 1233.0 0 2 PF02889.7.fs Sec63 Brl domain 1229.2 0 2 PF00270.19.ls DEAD/DEAH box helicase 293.1 4.8e-85 2 PF00270.19.fs DEAD/DEAH box helicase 289.5 6e-84 2 PF00271.21.fs Helicase conserved C-terminal domain 60.0 6.5e-17 2 PF00271.21.ls Helicase conserved C-terminal domain 56.3 9.2e-14 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00270.19.fs 1/2 372 551 .. 1 213 [] 146.5 6.8e-41 PF00270.19.ls 1/2 372 551 .. 1 213 [] 148.3 1.9e-41 PF00271.21.ls 1/2 664 750 .. 1 76 [] 45.3 1.9e-10 PF00271.21.fs 1/2 664 750 .. 1 76 [] 43.3 4.9e-12 PF02889.7.fs 1/2 871 1176 .. 1 352 [] 626.9 1.6e-185 PF02889.7.ls 1/2 871 1176 .. 1 352 [] 628.8 4.4e-186 PF00270.19.fs 2/2 1219 1390 .. 1 213 [] 143.0 7.3e-40 PF00270.19.ls 2/2 1219 1390 .. 1 213 [] 144.8 2.1e-40 PF00271.21.ls 2/2 1502 1585 .. 1 76 [] 11.0 0.0014 PF02889.7.fs 2/2 1702 2014 .. 1 352 [] 602.3 4e-178 PF02889.7.ls 2/2 1702 2014 .. 1 352 [] 604.2 1.1e-178 Alignments of top-scoring domains: PF00270.19.fs: domain 1 of 2, from 372 to 551: score 146.5, E = 6.8e-41 RF xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx *->tpiQaeaipaile.GrDvlvqApTGSGKTlafllPilqallk.penn ++iQ++ a+le+ +++l++ApTG+GKT ++l +l + k+ KIAA0788 372 NRIQSKLYRAALEtDENLLLCAPTGAGKTNVALMCMLREIGKhI--- 415 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx qeskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglk +++ + ++d+ +++++aP+r+L+++++ + k+++ +g++ KIAA0788 416 --NMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT--------YGIT 455 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx vallyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllk.grkr va l+G+++ +++ ++I+v+TP++++ + +k+g+++ KIAA0788 456 VAELTGDHQLCKEEISA-----------TQIIVCTPEKWDIITRKgGERT 494 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxx egasldlknl.kllVlDEAhrlldmkGfgedleeilrrlpr.pklrrlsq + +l +l++lDE+h+l d +g++le ++ r r+ + KIAA0788 495 ------YTQLvRLIILDEIHLLHDD--RGPVLEALVARAIRnIE-----M 531 RF xxxxxxxxxxxxxxxxxxxxx dlpnrqtllfSATlprnvedl<-* ++ +++ +++SATlp n ed+ KIAA0788 532 TQEDVRLIGLSATLP-NYEDV 551 PF00270.19.ls: domain 1 of 2, from 372 to 551: score 148.3, E = 1.9e-41 RF xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx *->tpiQaeaipaile.GrDvlvqApTGSGKTlafllPilqallk.penn ++iQ++ a+le+ +++l++ApTG+GKT ++l +l + k+ KIAA0788 372 NRIQSKLYRAALEtDENLLLCAPTGAGKTNVALMCMLREIGKhI--- 415 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx qeskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglk +++ + ++d+ +++++aP+r+L+++++ + k+++ +g++ KIAA0788 416 --NMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT--------YGIT 455 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx vallyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllk.grkr va l+G+++ +++ ++I+v+TP++++ + +k+g+++ KIAA0788 456 VAELTGDHQLCKEEISA-----------TQIIVCTPEKWDIITRKgGERT 494 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxx egasldlknl.kllVlDEAhrlldmkGfgedleeilrrlpr.pklrrlsq + +l +l++lDE+h+l d +g++le ++ r r+ + KIAA0788 495 ------YTQLvRLIILDEIHLLHDD--RGPVLEALVARAIRnIE-----M 531 RF xxxxxxxxxxxxxxxxxxxxx dlpnrqtllfSATlprnvedl<-* ++ +++ +++SATlp n ed+ KIAA0788 532 TQEDVRLIGLSATLP-NYEDV 551 PF00271.21.ls: domain 1 of 2, from 664 to 750: score 45.3, E = 1.9e-10 *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD l +++ + +a +h+g++ +R+ +++ F + ++vLv+T ++ G++ KIAA0788 664 LKdLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVN 710 ipdvnlVInydlpwnpes..........yiQRiGRaGRaG<-* +p+ +++I +pe ++ ++ + + +Q+ GRaGR KIAA0788 711 LPAHTVIIKGTQVYSPEKgrwtelgaldILQMLGRAGRPQ 750 PF00271.21.fs: domain 1 of 2, from 664 to 750: score 43.3, E = 4.9e-12 *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD l +++ + +a +h+g++ +R+ +++ F + ++vLv+T ++ G++ KIAA0788 664 LKdLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVN 710 ipdvnlVInydlpwnpes..........yiQRiGRaGRaG<-* +p+ +++I +pe ++ ++ + + +Q+ GRaGR KIAA0788 711 LPAHTVIIKGTQVYSPEKgrwtelgaldILQMLGRAGRPQ 750 PF02889.7.fs: domain 1 of 2, from 871 to 1176: score 626.9, E = 1.6e-185 *->ptdLGrIASyYVskWWarsrsYTkdYItydTietFnslLVNYKPket +t+LGrIAS+Y YIt+dT++t+n+lL k+t KIAA0788 871 VTELGRIASHY--------------YITNDTVQTYNQLL-----KPT 898 tteddlLeilSsAsEFkqipvReeEdleLrkLlerlPislacnpnledph ++e++l++++S +sEFk+i+vReeE+leL+kLler+Pi++ ++++e+p+ KIAA0788 899 LSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPV--KESIEEPS 946 vKiNvLLQAyiSRlklegfaLvsDtvyilqnagRllrAlfdIalsrGwls +KiNvLLQA+iS+lklegfaL++D+vy++q+agRl+rA+f+I+l+rGw++ KIAA0788 947 AKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQ 996 lAlkaLnLskmitQrlPWdsdsPLrQlPhlpaeHlikrledknketvfsl l++k LnL+kmi++r+ W+s++PLrQ+++lp+e ++k++e+ k +f++ KIAA0788 997 LTDKTLNLCKMIDKRM-WQSMCPLRQFRKLPEE-VVKKIEK--K--NFPF 1040 erLeDekrdELlelihsdkqladvarfvnLiryPkievieaelqpitrtv erL+D++++E++eli+++k++++++++v+ +Pk+e ++++lqpitr++ KIAA0788 1041 ERLYDLNHNEIGELIRMPKMGKTIHKYVH--LFPKLE-LSVHLQPITRST 1087 lrveltitpdLtwdervhgevpViAPlfPtkkeEgfWivveDsesnellH l+veltitpd++wde+vhg++ E+fWi+veD++s+ +lH KIAA0788 1088 LKVELTITPDFQWDEKVHGSS------------EAFWILVEDVDSEVILH 1125 iekflLnkkqvissdRLshlleFtiPlfeplppqyyirvVSDswlGaete +e+flL+ k++ +d +hl+ F++P+feplppqy+irvVSD+wl +et+ KIAA0788 1126 HEYFLLKAKYA--QD--EHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQ 1171 lpfsf<-* lp+sf KIAA0788 1172 LPVSF 1176 PF02889.7.ls: domain 1 of 2, from 871 to 1176: score 628.8, E = 4.4e-186 *->ptdLGrIASyYVskWWarsrsYTkdYItydTietFnslLVNYKPket +t+LGrIAS+Y YIt+dT++t+n+lL k+t KIAA0788 871 VTELGRIASHY--------------YITNDTVQTYNQLL-----KPT 898 tteddlLeilSsAsEFkqipvReeEdleLrkLlerlPislacnpnledph ++e++l++++S +sEFk+i+vReeE+leL+kLler+Pi++ ++++e+p+ KIAA0788 899 LSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPV--KESIEEPS 946 vKiNvLLQAyiSRlklegfaLvsDtvyilqnagRllrAlfdIalsrGwls +KiNvLLQA+iS+lklegfaL++D+vy++q+agRl+rA+f+I+l+rGw++ KIAA0788 947 AKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQ 996 lAlkaLnLskmitQrlPWdsdsPLrQlPhlpaeHlikrledknketvfsl l++k LnL+kmi++r+ W+s++PLrQ+++lp+e ++k++e+ k +f++ KIAA0788 997 LTDKTLNLCKMIDKRM-WQSMCPLRQFRKLPEE-VVKKIEK--K--NFPF 1040 erLeDekrdELlelihsdkqladvarfvnLiryPkievieaelqpitrtv erL+D++++E++eli+++k++++++++v+ +Pk+e ++++lqpitr++ KIAA0788 1041 ERLYDLNHNEIGELIRMPKMGKTIHKYVH--LFPKLE-LSVHLQPITRST 1087 lrveltitpdLtwdervhgevpViAPlfPtkkeEgfWivveDsesnellH l+veltitpd++wde+vhg++ E+fWi+veD++s+ +lH KIAA0788 1088 LKVELTITPDFQWDEKVHGSS------------EAFWILVEDVDSEVILH 1125 iekflLnkkqvissdRLshlleFtiPlfeplppqyyirvVSDswlGaete +e+flL+ k++ +d +hl+ F++P+feplppqy+irvVSD+wl +et+ KIAA0788 1126 HEYFLLKAKYA--QD--EHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQ 1171 lpfsf<-* lp+sf KIAA0788 1172 LPVSF 1176 PF00270.19.fs: domain 2 of 2, from 1219 to 1390: score 143.0, E = 7.3e-40 RF xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx *->tpiQaeaipaile.GrDvlvqApTGSGKTlafllPilqallk.penn +piQ +++++++++ +v+v ApTGSGKT +++ +il ll++ KIAA0788 1219 NPIQTQVFNTVYNsDDNVFVGAPTGSGKTICAEFAILRMLLQsS--- 1262 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx qeskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglk +++++++P+ +LaeQ+y ++ + ++ +l+ k KIAA0788 1263 -----------EGRCVYITPMEALAEQVYMDWYEKFQD-------RLNKK 1294 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx vallyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllk.grkr v+ll+G +s +l+ l ++ +I+++TP++++ l++++++r KIAA0788 1295 VVLLTGETST--DLKLL-----GK----GNIIISTPEKWDI-LSRrWKQR 1332 RF xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx xxxxxxxx egasldlknlkllVlDEAhrll.dmkGfgedleeilrrlpr.pklrrlsq ++ ++n+ l+V+DE+h+++++ g++le i +r+++ ++ q KIAA0788 1333 -KN---VQNINLFVVDEVHLIGgEN---GPVLEVICSRMRYiSS-----Q 1370 RF xxxxxxxxxxxxxxxxxxxxx dlpnrqtllfSATlprnvedl<-* +++++++++S l+ n++d+ KIAA0788 1371 IERPIRIVALSSSLS-NAKDV 1390 PF00270.19.ls: domain 2 of 2, from 1219 to 1390: score 144.8, E = 2.1e-40 RF xxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx *->tpiQaeaipaile.GrDvlvqApTGSGKTlafllPilqallk.penn +piQ +++++++++ +v+v ApTGSGKT +++ +il ll++ KIAA0788 1219 NPIQTQVFNTVYNsDDNVFVGAPTGSGKTICAEFAILRMLLQsS--- 1262 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx qeskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglk +++++++P+ +LaeQ+y ++ + ++ +l+ k KIAA0788 1263 -----------EGRCVYITPMEALAEQVYMDWYEKFQD-------RLNKK 1294 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxx vallyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllk.grkr v+ll+G +s +l+ l ++ +I+++TP++++ l++++++r KIAA0788 1295 VVLLTGETST--DLKLL-----GK----GNIIISTPEKWDI-LSRrWKQR 1332 RF xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx xxxxxxxx egasldlknlkllVlDEAhrll.dmkGfgedleeilrrlpr.pklrrlsq ++ ++n+ l+V+DE+h+++++ g++le i +r+++ ++ q KIAA0788 1333 -KN---VQNINLFVVDEVHLIGgEN---GPVLEVICSRMRYiSS-----Q 1370 RF xxxxxxxxxxxxxxxxxxxxx dlpnrqtllfSATlprnvedl<-* +++++++++S l+ n++d+ KIAA0788 1371 IERPIRIVALSSSLS-NAKDV 1390 PF00271.21.ls: domain 2 of 2, from 1502 to 1585: score 11.0, E = 0.0014 *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD l + v++lh gls+ eR+ +++ F +g ++v+va++ + G + KIAA0788 1502 TLlNG---VGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMN 1545 ipdvnlVInydl...........pwnpesyiQRiGRaGRaG<-* + ++ lVI++d + +++ + + + + +Q++G a R KIAA0788 1546 V-AAHLVIIMDTqyyngkihayvDYPIYDVLQMVGHANRPL 1585 PF02889.7.fs: domain 2 of 2, from 1702 to 2014: score 602.3, E = 4e-178 *->ptdLGrIASyYVskWWarsrsYTkdYItydTietFnslLVNYKPket p++LG+IA+yY YI+y+Tie+F+++L +++ KIAA0788 1702 PLNLGMIAAYY--------------YINYTTIELFSMSL-----NAK 1729 tteddlLeilSsAsEFkqipvReeEdleLrkLlerlPislacnpnledph t+ ++l+ei+S+A+E+++ip+R++Ed++Lr+L++++P++l+ np+++dph KIAA0788 1730 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLN-NPKFNDPH 1778 vKiNvLLQAyiSRlklegfaLvsDtvyilqnagRllrAlfdIalsrGwls vK+N+LLQA++SR++l++ +L+sDt++il++a+Rl++A++d+++s+Gwls KIAA0788 1779 VKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLS 1827 lAlkaLnLskmitQrlPWdsdsPLrQlPhlpaeHlikrledknketvfsl +Al a++L++m+tQ++ W++ds+L+QlPh+++e +ikr++dk++e+vf++ KIAA0788 1828 PALAAMELAQMVTQAM-WSKDSYLKQLPHFTSE-HIKRCTDKGVESVFDI 1875 erLeDekrdELlelihsdkqladvarfvnLiryPkievieaelqpitrtv +++eDe+r+ Ll+l +d+q+advarf+n ryP+ie +++e++++++++ KIAA0788 1876 MEMEDEERNALLQL--TDSQIADVARFCN--RYPNIE-LSYEVVDKDSIR 1920 lrveltitpdLtwdervhgevpViAPlfPtkkeEgfWivveDsesnellH ++ +++++++L+++e+v+g pViAPlfP+k+eEg+W+v++D++sn l+ KIAA0788 1921 SGGPVVVLVQLEREEEVTG--PVIAPLFPQKREEGWWVVIGDAKSNSLIS 1968 iekflLnkkqvissdRLshlleFtiPlfeplppqyyirvVSDswlGaete i++++L++k+ +++l+F++P +++ ++y+++++SD ++G+++e KIAA0788 1969 IKRLTLQQKA-------KVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQE 2009 lpfsf<-* ++fs+ KIAA0788 2010 YKFSV 2014 PF02889.7.ls: domain 2 of 2, from 1702 to 2014: score 604.2, E = 1.1e-178 *->ptdLGrIASyYVskWWarsrsYTkdYItydTietFnslLVNYKPket p++LG+IA+yY YI+y+Tie+F+++L +++ KIAA0788 1702 PLNLGMIAAYY--------------YINYTTIELFSMSL-----NAK 1729 tteddlLeilSsAsEFkqipvReeEdleLrkLlerlPislacnpnledph t+ ++l+ei+S+A+E+++ip+R++Ed++Lr+L++++P++l+ np+++dph KIAA0788 1730 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLN-NPKFNDPH 1778 vKiNvLLQAyiSRlklegfaLvsDtvyilqnagRllrAlfdIalsrGwls vK+N+LLQA++SR++l++ +L+sDt++il++a+Rl++A++d+++s+Gwls KIAA0788 1779 VKTNLLLQAHLSRMQLSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLS 1827 lAlkaLnLskmitQrlPWdsdsPLrQlPhlpaeHlikrledknketvfsl +Al a++L++m+tQ++ W++ds+L+QlPh+++e +ikr++dk++e+vf++ KIAA0788 1828 PALAAMELAQMVTQAM-WSKDSYLKQLPHFTSE-HIKRCTDKGVESVFDI 1875 erLeDekrdELlelihsdkqladvarfvnLiryPkievieaelqpitrtv +++eDe+r+ Ll+l +d+q+advarf+n ryP+ie +++e++++++++ KIAA0788 1876 MEMEDEERNALLQL--TDSQIADVARFCN--RYPNIE-LSYEVVDKDSIR 1920 lrveltitpdLtwdervhgevpViAPlfPtkkeEgfWivveDsesnellH ++ +++++++L+++e+v+g pViAPlfP+k+eEg+W+v++D++sn l+ KIAA0788 1921 SGGPVVVLVQLEREEEVTG--PVIAPLFPQKREEGWWVVIGDAKSNSLIS 1968 iekflLnkkqvissdRLshlleFtiPlfeplppqyyirvVSDswlGaete i++++L++k+ +++l+F++P +++ ++y+++++SD ++G+++e KIAA0788 1969 IKRLTLQQKA-------KVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQE 2009 lpfsf<-* ++fs+ KIAA0788 2010 YKFSV 2014 //