# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk05526s2.fasta.huge -Q ../query/KIAA0788.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0788, 2026 aa vs ./tmplib.23663 library 1985479 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.9231+/-0.00569; mu= 18.8260+/- 0.388 mean_var=107.5060+/-25.429, 0's: 0 Z-trim: 3 B-trim: 7 in 1/39 Lambda= 0.123697 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 42, opt: 30, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0052 ( 1046 res) ha01319(revised) (1046) 236 54.5 1.7e-07 KIAA0801 ( 1058 res) hg03949(revised) (1058) 184 45.2 0.00011 >>KIAA0052 ( 1046 res) ha01319(revised) (1046 aa) initn: 256 init1: 161 opt: 236 Z-score: 226.4 bits: 54.5 E(): 1.7e-07 Smith-Waterman score: 357; 25.322% identity (53.433% similar) in 466 aa overlap (1214-1622:139-573) 1190 1200 1210 1220 1230 1240 KIAA07 KYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFNTVYNSDDNVFVGAPT ..:: .. .: .... : : ...:.:.: : KIAA00 ETVEGCTHEVALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDN-NQSVLVSAHT 110 120 130 140 150 160 1250 1260 1270 1280 1290 1300 KIAA07 GSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGET ..:::.:::.:: : ... : .. .:..::..: : . ::.::: : :.:: KIAA00 SAGKTVCAEYAIALALREKQ--RVIFTSPIKALSNQKYREMYEEFQD-----VGLMTG-- 170 180 190 200 210 1310 1320 1330 1340 1350 1360 KIAA07 STDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLI-GGENGPVLEVIC :. . .. .. : : . : .. . .... . ::.: . .: : : : KIAA00 --DVTINPTASCLVMTTEI--LRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWE--- 220 230 240 250 260 270 1370 1380 1390 1400 1410 KIAA07 SRMRYISSQIERP--IRIVALSSSLSNAKDVAHWLGCS--ATSTFNFHPNVRPVPLE--- . : : .. : ::... ::.. :.:. : .. . ::.::. KIAA00 ------ETIILLPDNVHYVFLSATIPNARQFAEWI-CHLHKQPCHVIYTDYRPTPLQHYI 280 290 300 310 320 1420 1430 1440 KIAA07 -------LHI----------QGFNISHTQTRLLS-MAK------------P--VYHAITK ::. ..:: . : . .:: : :.. . KIAA00 FPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKM 330 340 350 360 370 380 1450 1460 1470 1480 1490 KIAA07 HSPK--KPVIVFVPSRKQT-----RLTAIDILTTCAADIQRQRF---LHC-TEKDL-IPY . .:::.: :.:. ..: .:. : . .. : . : ...: .: KIAA00 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQ 390 400 410 420 430 440 1500 1510 1520 1530 1540 1550 KIAA07 LEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHL .:.. : :.: : :: :. .. .: ::: : :... :.... :.:. :. KIAA00 VEHV-----LPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPART 450 460 470 480 490 1560 1570 1580 1590 1600 KIAA07 VIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY- :.. ... ..:: ... : .:: :.:.: .::.: ..: . . . . : : KIAA00 VLFTNARKFDGKDFRWISSGEY--IQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLK 500 510 520 530 540 550 1610 1620 1630 1640 1650 1660 KIAA07 ---EPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGI .:: :: . : KIAA00 GSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYN 560 570 580 590 600 610 >>KIAA0801 ( 1058 res) hg03949(revised) (1058 aa) initn: 166 init1: 81 opt: 184 Z-score: 176.2 bits: 45.2 E(): 0.00011 Smith-Waterman score: 194; 23.367% identity (52.261% similar) in 398 aa overlap (241-606:282-658) 220 230 240 250 260 270 KIAA07 LRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFLYQLHETEKEDLIREERSRRE .. : ..: . . : :. .. .... : KIAA08 DPLDAYMEEVKEEVKKFNMRSVKGGGGNEKKSGPTVTKVVTVV--TTKKAVVDSDKKKGE 260 270 280 290 300 280 290 300 310 320 KIAA07 RVR--QSRMD--TDLETMDLDQG--GEALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGS .. :. :. .. : .::. . : :..:. : . : : ..:. . KIAA08 LMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELA 310 320 330 340 350 360 330 340 350 360 370 380 KIAA07 FRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRA--- . . :::.: :. . . . . : . . ...: :. ..: :: .... :. KIAA08 ----KMSQEEVNVFRLEMEGITVKGKGCP-KPIKSWVQCGI-SMKILNSLKKHGYEKPTP 370 380 390 400 410 420 390 400 410 420 430 KIAA07 -------ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD---GTINVDDFKIIYI :. . ..:. : ::.::: . :. :.:.: . ... : : : . KIAA08 IQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAV------IM 430 440 450 460 470 440 450 460 470 480 KIAA07 APMRSLVQEMVG---SFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW-DIIT .: : :. ... .:.: :. . : :: . : ...:::::: . :... KIAA08 TPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLA 480 490 500 510 520 530 490 500 510 520 530 540 KIAA07 RKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN ..:. : . : ..::: . : : .: : : . :. . : . . .:::.: KIAA08 ANSGRVTNLRRVTYVVLDEADRMFD-MG--FEPQVMRIVDNV---RPDRQTVMFSATFPR 540 550 560 570 580 590 550 560 570 580 590 KIAA07 -YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITE-KKAIKRFQIMNE-------IV .: .: . : . . : .:: . : : :: .: ...... :. KIAA08 AMEALARRILSKPIE-VQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 600 610 620 630 640 650 600 610 620 630 640 650 KIAA07 YEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQ . .::: KIAA08 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 660 670 680 690 700 710 2026 residues in 1 query sequences 1985479 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:02 2008 done: Thu Dec 18 15:16:03 2008 Total Scan time: 1.000 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]