hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13023904/chunk_1/iprscan-20080502-13023904.nocrc
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Query sequence: KIAA0787
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 323.3    1.7e-92   1
SM00219                                                  24.4    1.2e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     166   441 ..     1   280 []    24.4  1.2e-12
SM00220    1/1     166   447 ..     1   231 []   323.3  1.7e-92

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 166 to 441: score 24.4, E = 1.2e-12
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda...........
                       tl++++G G +G+V ++   ++++  A K+L + +  ++ + ++++
    KIAA0787   166    YTLKDEIGKGSYGVVKLAYNEndnTYYAMKVLSKKKlirqagfprrp 212  

                   ..................keeFlrEakiMkklGgkHpNiVkLlGvcteeg
                   +++++++ +++  ++++++e  ++E+ i+kkl  +HpN+VkL+ v  ++ 
    KIAA0787   213 pprgtrpapggciqprgpIEQVYQEIAILKKL--DHPNVVKLVEVLDDPN 260  

                   rrFmevePlmivmEymegGdLldyLrknrpklslsdLlsfAlQIAkGMeY
                   +     + l++v+E++  G   +     +p ls ++   +  +  kG eY
    KIAA0787   261 E-----DHLYMVFELVNQGPVME-VPTLKP-LSEDQARFYFQDLIKGIEY 303  

                   LesknfvHRDLAARNcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrk
                   L+ ++++HRD+   N Lvge++++KI+DFG s + +         d    
    KIAA0787   304 LHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGS-------DAL-- 344  

                   kggkggktllPirWmAPEsl..kdgkFtskS.DVWSFGVlLWEiftlGeq
                        ++t+     mAPEsl++  ++F+ k  DVW+ GV+L+  f +G+ 
    KIAA0787   345 ----LSNTVGTPAFMAPESLseTRKIFSGKAlDVWAMGVTLY-CFVFGQC 389  

                   PYpgeiqq.fmsneevleylkkGyRlpkPendlpiSsvtCPdelYdlMlq
                   P  +e  + ++  + +  +  +   +++P+           ++l dl+++
    KIAA0787   390 PFMDE--RiMCLHSKIKSQALEF--PDQPDI---------AEDLKDLITR 426  

                   CWaedPedRPtFselverl<-*
                     + +Pe+R     +v ++   
    KIAA0787   427 MLDKNPESR----IVVPEI    441  

SM00220: domain 1 of 1, from 166 to 447: score 323.3, E = 1.7e-92
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..............
                      Y+l +++GkG++G+V+la++ +++ ++A+Kv+++++  ++ + ++++
    KIAA0787   166    YTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSkkklirqagfprrp 212  

                   ...................erilrEikiLkk.dHPNIVkLydvfed...d
                   +++++++ +++  +++++ e++++Ei+iLkk dHPN+VkL +v +d+++d
    KIAA0787   213 pprgtrpapggciqprgpiEQVYQEIAILKKlDHPNVVKLVEVLDDpneD 262  

                   klylVmEyceGdlGdLfdllkkrgrrglrkvlsE.earfyfrQilsaLeY
                   +ly+V+E++++  G ++++   ++       lsE++arfyf+ +++++eY
    KIAA0787   263 HLYMVFELVNQ--GPVMEVPTLKP-------LSEdQARFYFQDLIKGIEY 303  

                   LHsqgIiHRDLKPeNiLLds..hvKlaDFGlArql.......ttfvGTpe
                   LH q+IiHRD+KP+N+L+ +++h+K+aDFG++ ++++++   +  vGTp 
    KIAA0787   304 LHYQKIIHRDIKPSNLLVGEdgHIKIADFGVSNEFkgsdallSNTVGTPA 353  

                   YmAPEvl.....gYgkpavDiWSlGcilyElltGkpPFp..qldlifkki
                   +mAPE l+++++ ++++a D+W+ G++ly ++ G+ PF ++ ++ +  ki
    KIAA0787   354 FMAPESLsetrkIFSGKALDVWAMGVTLYCFVFGQCPFMdeRIMCLHSKI 403  

                   g............SpeakdLikklLvkdPekRlta.eaLedeldikaHPf
                   ++   + ++ ++  +++kdLi ++L+k+Pe R+ ++e+         HP+
    KIAA0787   404 KsqalefpdqpdiAEDLKDLITRMLDKNPESRIVVpEIKL-------HPW 446  

                   f<-*
                   +   
    KIAA0787   447 V    447  

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