hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12555825/chunk_1/iprscan-20080502-12555825.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0783
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00628.19.fs PHD-finger                                     111.5    2.3e-35   3
PF00628.19.ls PHD-finger                                     113.8    4.5e-31   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00628.19.fs   1/3     332   391 ..     1    51 []    49.8  1.4e-15
PF00628.19.ls   1/2     332   391 ..     1    51 []    51.8  2.1e-12
PF00628.19.fs   3/3     738   790 ..     1    51 []    60.1  6.8e-19
PF00628.19.ls   2/2     738   790 ..     1    51 []    62.1  1.7e-15

Alignments of top-scoring domains:
PF00628.19.fs: domain 1 of 3, from 332 to 391: score 49.8, E = 1.4e-15
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.....
                      +C+vC + +s++ ++++qCD+C+  +H  C+g + e+  i+++ +++
    KIAA0783   332    ICCVCLGDNSEDADEIIQCDNCGITVHEGCYGVDGESDSIMSsasen 378  

                   ....WyCpeCkpk<-*
                   ++++W+C+ Ck++   
    KIAA0783   379 stepWFCDACKCG    391  

PF00628.19.ls: domain 1 of 2, from 332 to 391: score 51.8, E = 2.1e-12
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.....
                      +C+vC + +s++ ++++qCD+C+  +H  C+g + e+  i+++ +++
    KIAA0783   332    ICCVCLGDNSEDADEIIQCDNCGITVHEGCYGVDGESDSIMSsasen 378  

                   ....WyCpeCkpk<-*
                   ++++W+C+ Ck++   
    KIAA0783   379 stepWFCDACKCG    391  

PF00628.19.fs: domain 3 of 3, from 738 to 790: score 60.1, E = 6.8e-19
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.....
                       C++C+k  +++  +ll+CD+C+ ++Hl Cl+ppl+  ++p +++++
    KIAA0783   738    SCGICKK--NHDQHLLLLCDTCKLHYHLGCLDPPLT--RMPRktkns 780  

                   .WyCpeCkpk<-*
                    W+C eC+ +   
    KIAA0783   781 yWQCSECDQA    790  

PF00628.19.ls: domain 2 of 2, from 738 to 790: score 62.1, E = 1.7e-15
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.....
                       C++C+k  +++  +ll+CD+C+ ++Hl Cl+ppl+  ++p +++++
    KIAA0783   738    SCGICKK--NHDQHLLLLCDTCKLHYHLGCLDPPLT--RMPRktkns 780  

                   .WyCpeCkpk<-*
                    W+C eC+ +   
    KIAA0783   781 yWQCSECDQA    790  

//