hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12542014/chunk_1/iprscan-20080502-12542014.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0782 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 227.0 1.1e-66 1 PF00620.17.ls RhoGAP domain 228.9 1e-65 1 PF00169.19.fs PH domain 180.8 1.4e-54 5 PF00169.19.ls PH domain 179.2 9.1e-51 5 PF01412.9.fs Putative GTPase activating protein for Arf 106.6 2.4e-30 1 PF01412.9.ls Putative GTPase activating protein for Arf 107.6 3.3e-29 1 PF00788.13.ls Ras association (RalGDS/AF-6) domain 64.7 2.7e-16 1 PF00788.13.fs Ras association (RalGDS/AF-6) domain 62.8 5.5e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.ls 1/5 159 250 .. 1 92 [] 62.9 9.5e-16 PF00169.19.fs 1/5 159 250 .. 1 92 [] 60.9 4.3e-18 PF01412.9.fs 1/1 366 454 .. 1 94 [. 106.6 2.4e-30 PF01412.9.ls 1/1 366 490 .. 1 137 [] 107.6 3.3e-29 PF00169.19.ls 3/5 575 681 .. 1 92 [] 52.2 1.6e-12 PF00169.19.fs 3/5 575 681 .. 1 92 [] 50.2 8e-15 PF00620.17.ls 1/1 802 951 .. 1 155 [] 228.9 1e-65 PF00620.17.fs 1/1 802 951 .. 1 155 [] 227.0 1.1e-66 PF00788.13.ls 1/1 1003 1092 .. 1 97 [] 64.7 2.7e-16 PF00788.13.fs 1/1 1003 1092 .. 1 97 [] 62.8 5.5e-16 PF00169.19.fs 5/5 1106 1227 .. 1 92 [] 49.0 1.9e-14 PF00169.19.ls 5/5 1106 1227 .. 1 92 [] 51.0 3.7e-12 Alignments of top-scoring domains: PF00169.19.ls: domain 1 of 5, from 159 to 250: score 62.9, E = 9.5e-16 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL vik GwL k ++g ++kR++ L +d+L y+++ k++ k+ i++ KIAA0782 159 VIKAGWLDKNPpqGSYIYQKRWVRLDTDHLRYFDSNKdAYSKRFISV 205 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< i+ + + + Fe++t++r t+ ++aes+ erkeW++a+q+a++ KIAA0782 206 ACISHVAAIG---DQKFEVITnNR-TFAFRAESDVERKEWMQALQQAMA 250 -* KIAA0782 - - PF00169.19.fs: domain 1 of 5, from 159 to 250: score 60.9, E = 4.3e-18 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL vik GwL k ++g ++kR++ L +d+L y+++ k++ k+ i++ KIAA0782 159 VIKAGWLDKNPpqGSYIYQKRWVRLDTDHLRYFDSNKdAYSKRFISV 205 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< i+ + + + Fe++t++r t+ ++aes+ erkeW++a+q+a++ KIAA0782 206 ACISHVAAIG---DQKFEVITnNR-TFAFRAESDVERKEWMQALQQAMA 250 -* KIAA0782 - - PF01412.9.fs: domain 1 of 1, from 366 to 454: score 106.6, E = 2.4e-30 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn +v +++ + N+ C+DCga p P+WaS+nl v++C +C+G HR+ KIAA0782 366 SEVAERIWAAA-PNRFCADCGA-PQPDWASINLCVVICKRCAGEHRG 410 LfGvHiSkVnvRSltLD..sWtpeelrklesckgGNenansfwEsnldd< L G +SkV RSl++D++ Wt++ ++++ +GN + n+fw +n+++ KIAA0782 411 L-GAGVSKV--RSLKMDrkVWTETLIELFL--QLGNGAGNRFWAANVPP 454 -* KIAA0782 - - PF01412.9.ls: domain 1 of 1, from 366 to 490: score 107.6, E = 3.3e-29 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn +v +++ + N+ C+DCga p P+WaS+nl v++C +C+G HR+ KIAA0782 366 SEVAERIWAAA-PNRFCADCGA-PQPDWASINLCVVICKRCAGEHRG 410 LfGvHiSkVnvRSltLD..sWtpeelrklesckgGNenansfwEsnlddf L G +SkV RSl++D++ Wt++ ++++ +GN + n+fw +n+++ KIAA0782 411 L-GAGVSKV--RSLKMDrkVWTETLIELFL--QLGNGAGNRFWAANVPPS 455 slkpkdsdaaavKCqddrqkyesfiaaKYeeklf..vlkeeqee<-* + + s+ ++ + aKY+e ++++++++ KIAA0782 456 EALQPSSS---------PSTRRCHLEAKYREGKYrrYHPLFGNQ 490 PF00169.19.ls: domain 3 of 5, from 575 to 681: score 52.2, E = 1.6e-12 *->vikeGwLlkkg..........gkkswkkRyfvLfddvLlyykdkk.k v ++G+L+k + ++ +++++++++ +R++vL d+vL+y++++ KIAA0782 575 VSHSGFLYKTAsagkllqdrrAREEFSRRWCVLGDGVLSYFENERaV 621 kpkgsipLsgiqvtkvpdn...krkncFeirt.dretlllqaeseeerke +p g i s+i + vp++++++ +++Fe+ t++++ +l+ es+e+++e KIAA0782 622 TPNGEIRASEIVCLAVPPPdthGFEHTFEVYTeGERLYLFGLESAEQAHE 671 Wvkaiqsair<-* Wvk+i +a KIAA0782 672 WVKCIAKAFV 681 PF00169.19.fs: domain 3 of 5, from 575 to 681: score 50.2, E = 8e-15 *->vikeGwLlkkg..........gkkswkkRyfvLfddvLlyykdkk.k v ++G+L+k + ++ +++++++++ +R++vL d+vL+y++++ KIAA0782 575 VSHSGFLYKTAsagkllqdrrAREEFSRRWCVLGDGVLSYFENERaV 621 kpkgsipLsgiqvtkvpdn...krkncFeirt.dretlllqaeseeerke +p g i s+i + vp++++++ +++Fe+ t++++ +l+ es+e+++e KIAA0782 622 TPNGEIRASEIVCLAVPPPdthGFEHTFEVYTeGERLYLFGLESAEQAHE 671 Wvkaiqsair<-* Wvk+i +a KIAA0782 672 WVKCIAKAFV 681 PF00620.17.ls: domain 1 of 1, from 802 to 951: score 228.9, E = 1e-65 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P iv++C++++ + GL++EGIyR++G +s+ ++L e ++++++ +++ KIAA0782 802 PVIVYRCVDYITQCGLTSEGIYRKCGQTSKTQRLLESLRQDARSVHL 848 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea ++e+ v +v+s+LK+FLR+LP++L+t+++ +++e a ++edeee++++ KIAA0782 849 KEGEQHVDDVSSALKRFLRDLPDGLFTRAQRLTWLE-ASEIEDEEEKVSR 897 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +rell LPp+Nr+t ++L+ hL+ V+++s+ N+M++hNLAivFgPtL++ KIAA0782 898 YRELLVRLPPVNRATVKALISHLYCVQCFSDTNQMNVHNLAIVFGPTLFQ 947 ppdgdsad<-* + ++ KIAA0782 948 T----DGQ 951 PF00620.17.fs: domain 1 of 1, from 802 to 951: score 227.0, E = 1.1e-66 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P iv++C++++ + GL++EGIyR++G +s+ ++L e ++++++ +++ KIAA0782 802 PVIVYRCVDYITQCGLTSEGIYRKCGQTSKTQRLLESLRQDARSVHL 848 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea ++e+ v +v+s+LK+FLR+LP++L+t+++ +++e a ++edeee++++ KIAA0782 849 KEGEQHVDDVSSALKRFLRDLPDGLFTRAQRLTWLE-ASEIEDEEEKVSR 897 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +rell LPp+Nr+t ++L+ hL+ V+++s+ N+M++hNLAivFgPtL++ KIAA0782 898 YRELLVRLPPVNRATVKALISHLYCVQCFSDTNQMNVHNLAIVFGPTLFQ 947 ppdgdsad<-* + ++ KIAA0782 948 T----DGQ 951 PF00788.13.ls: domain 1 of 1, from 1003 to 1092: score 64.7, E = 2.7e-16 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe +++++ Vy+e +++t +i+v+ ++Taee+ ++L+++++ + ++ KIAA0782 1003 GDFICTVYLEEKKAETEQHIKVPASMTAEELTLEILDRRNVGIREKD 1049 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred ++ ++E v er++ er +L+ Ek+l i+ l++ +s+++++++++ KIAA0782 1050 YWTCFE---VNEREEAER-PLHFAEKVLPILHGLGT---DSHLVVKKHQA 1092 <-* KIAA0782 - - PF00788.13.fs: domain 1 of 1, from 1003 to 1092: score 62.8, E = 5.5e-16 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe +++++ Vy+e +++t +i+v+ ++Taee+ ++L+++++ + ++ KIAA0782 1003 GDFICTVYLEEKKAETEQHIKVPASMTAEELTLEILDRRNVGIREKD 1049 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred ++ ++E v er++ er +L+ Ek+l i+ l++ +s+++++++++ KIAA0782 1050 YWTCFE---VNEREEAER-PLHFAEKVLPILHGLGT---DSHLVVKKHQA 1092 <-* KIAA0782 - - PF00169.19.fs: domain 5 of 5, from 1106 to 1227: score 49.0, E = 1.9e-14 *->vikeGwLlkkg.........gkkswkkRyfvLfddvLlyykdkk... +k+G ++ +++++ + + +++++Ryf+L +++L +yk+ +++ KIAA0782 1106 DTKHGMMKFREdrsllglglPSGGFHDRYFILNSSCLRLYKEVRsqr 1152 .........kkpkgsipLsgiqvtkvpdn....krkncFeirt.dr.... + ++ ++++++p + +p+++++v+ ++ + +++ +F ++++++++++ KIAA0782 1153 pwsgapetsHRPEKEWPIKSLKVYLGVKKklrpPTCWGFTVVHeTEkhek 1202 etlllqaeseeerkeWvkaiqsair<-* ++++l+++++ e++eW + + +++ KIAA0782 1203 QQWYLCCDTQMELREWFATFLFVQH 1227 PF00169.19.ls: domain 5 of 5, from 1106 to 1227: score 51.0, E = 3.7e-12 *->vikeGwLlkkg.........gkkswkkRyfvLfddvLlyykdkk... +k+G ++ +++++ + + +++++Ryf+L +++L +yk+ +++ KIAA0782 1106 DTKHGMMKFREdrsllglglPSGGFHDRYFILNSSCLRLYKEVRsqr 1152 .........kkpkgsipLsgiqvtkvpdn....krkncFeirt.dr.... + ++ ++++++p + +p+++++v+ ++ + +++ +F ++++++++++ KIAA0782 1153 pwsgapetsHRPEKEWPIKSLKVYLGVKKklrpPTCWGFTVVHeTEkhek 1202 etlllqaeseeerkeWvkaiqsair<-* ++++l+++++ e++eW + + +++ KIAA0782 1203 QQWYLCCDTQMELREWFATFLFVQH 1227 //