hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12473653/chunk_1/iprscan-20080502-12473653.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0778 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-ty 2526.3 0 1 TIGR01494 ATPase_P-type: ATPase, P-type (transpo 417.5 6.2e-123 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01106 1/1 54 1049 .] 1 998 [] 2526.3 0 TIGR01494 1/5 162 254 .. 1 93 [. 87.2 1.6e-23 TIGR01494 2/5 306 431 .. 123 245 .. 113.8 1.7e-31 TIGR01494 4/5 610 660 .. 316 366 .. 64.7 3.2e-17 TIGR01494 5/5 715 834 .. 365 478 .] 149.4 3e-42 Alignments of top-scoring domains: TIGR01106: domain 1 of 1, from 54 to 1049: score 2526.3, E = 0 *->kkkekleelkkElelddHklsleelerkyqtdlekGLsearaaelLa +k+++l+elkkE+++ddHklsl+el rkyq+dl+kGL+++ra+++La KIAA0778 54 QKEKELDELKKEVAMDDHKLSLDELGRKYQVDLSKGLTNQRAQDVLA 100 RDGpnaLtPPkqtPEwvKFcrqlfGGfsiLlWigailCflAygiqaseee RDGpnaLtPP++tPEwvKFcrqlfGGfsiLlWigailCflAygiqa++e+ KIAA0778 101 RDGPNALTPPPTTPEWVKFCRQLFGGFSILLWIGAILCFLAYGIQAAMED 150 epsddnlYLgivLsavvivtGvFsYYqEaKsskimesFknmvPqqAlviR eps+dnlYLg+vL+avvivtG+FsYYqEaKsskim+sFknmvPqqAlviR KIAA0778 151 EPSNDNLYLGVVLAAVVIVTGCFSYYQEAKSSKIMDSFKNMVPQQALVIR 200 dgeKlsinaeqlvvGdlvevkgGDriPadlRiisakgckvDnssLtGEsE +geK++inae++vvGdlvevkgGDr+PadlRiis++gckvDnssLtGEsE KIAA0778 201 EGEKMQINAEEVVVGDLVEVKGGDRVPADLRIISSHGCKVDNSSLTGESE 250 PqtRspefthenPlEtkniaffstncvegtakGivvstGDrtviGriAsL PqtRspefthenPlEt+ni+ffstncvegta+Giv++tGDrtv+GriA+L KIAA0778 251 PQTRSPEFTHENPLETRNICFFSTNCVEGTARGIVIATGDRTVMGRIATL 300 AsGlengktPiAiEieHFihiitGvAvflGvsFfiialilgYtwLeaviF AsGle+g+tPiA+EieHFi++itGvAvflGvsFf+++lilgY+wLeaviF KIAA0778 301 ASGLEVGRTPIAMEIEHFIQLITGVAVFLGVSFFVLSLILGYSWLEAVIF 350 ligiivAnvPEGLLAtvtvcLtltAKrmAkKnClvKnLEAvetLGstsvi ligiivAnvPEGLLAtvtvcLtltAKrmA+KnClvKnLEAvetLGsts+i KIAA0778 351 LIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTI 400 CsDKtGtLtqnrmtvahlWfDnqiheADttEdqsgvsfDkssetwkaLsr CsDKtGtLtqnrmtvah+WfDnqiheADttEdqsg++fDk+s+tw+aLsr KIAA0778 401 CSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGATFDKRSPTWTALSR 450 iatLCnRAeFkagqdnvpvlkkevaGDAsEtAlLKfiElslGdvmeiRer ia+LCnRA+Fkagq+n++v k+++aGDAsE+AlLK+iEls+G+v+++R+r KIAA0778 451 IAGLCNRAVFKAGQENISVSKRDTAGDASESALLKCIELSCGSVRKMRDR 500 nkKvaEiPFnstnKyqlsiHetedpsdkryllvmKGAPEriLerCstili n+KvaEiPFnstnKyqlsiHe+ed+ ++ ++lvmKGAPEriL+rCstil+ KIAA0778 501 NPKVAEIPFNSTNKYQLSIHEREDSPQS-HVLVMKGAPERILDRCSTILV 549 kGkeqpLdeelkeafqnAYleLGGLGERvLGFchlyLpedqyPegfkFdv +Gke pLd+e+++afqnAY+eLGGLGERvLGFc+l Lp+ ++P+gfkFd+ KIAA0778 550 QGKEIPLDKEMQDAFQNAYMELGGLGERVLGFCQLNLPSGKFPRGFKFDT 599 devnFptenLcFvGLlsmidPPRaavPDAvaKCRsAGikvimvtGDHPit de+nFpte+LcFvGL+smidPPRaavPDAv+KCRsAGikvimvtGDHPit KIAA0778 600 DELNFPTEKLCFVGLMSMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT 649 AKAiAksvGiisegnEtvEDiAaRLnipveqvnkrdAkAcvvhGaeLkDm AKAiAk+vGiisegnEtvEDiAaRLnip++qvn+r+AkAcvvhG++LkDm KIAA0778 650 AKAIAKGVGIISEGNETVEDIAARLNIPMSQVNPREAKACVVHGSDLKDM 699 sseqldeiLknhtEivFARtsPqqKLiivEgCqRqgAivAvtGDGvnDsP +seqldeiLknhtEivFARtsPqqKLiivEgCqRqgAivAvtGDGvnDsP KIAA0778 700 TSEQLDEILKNHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSP 749 AlKKADiGvAmGiaGsDvsKqAADmiLLDDnFAsivtGvEeGRLiFDnLK AlKKADiG+AmGi+GsDvsKqAADmiLLDDnFAsivtGvEeGRLiFDnLK KIAA0778 750 ALKKADIGIAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLK 799 KsiaYtLtsnipEitPfLifiivniPLPlGtitiLcidLgtDivPaisLA KsiaYtLtsnipEitPfL+fii+niPLPlGt+tiLcidLgtD+vPaisLA KIAA0778 800 KSIAYTLTSNIPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLA 849 YekAEsDimkrkPrnpkrDkLvnerLislaYgqiGmiqalagFftYFvil Ye+AEsDimkr+Prn+++DkLvnerLis+aYgqiGmiqal+gFftYFvil KIAA0778 850 YEAAESDIMKRQPRNSQTDKLVNERLISMAYGQIGMIQALGGFFTYFVIL 899 AenGflPskllglRveWddkavndleDsyGqeWtyeqRkvleytcytaFF AenGflPs+llg+R++Wdd+++ndleDsyGqeWtyeqRkv+e+tc+taFF KIAA0778 900 AENGFLPSRLLGIRLDWDDRTMNDLEDSYGQEWTYEQRKVVEFTCHTAFF 949 vsivvvqwADliirKtRRnsvFqqGlmrnkilifglveetalaafLsYcp sivvvqwADlii+KtRRnsvFqqG m+nkilifgl+eetalaafLsYcp KIAA0778 950 ASIVVVQWADLIICKTRRNSVFQQG-MKNKILIFGLLEETALAAFLSYCP 998 GmetalrlyplkltwWlvalPysllifvYDEiRklilRrnPGgWveketY Gm +alr+yplk+twW++a+Pysllif+YDE+RklilRr+PGgWveketY KIAA0778 999 GMGVALRMYPLKVTWWFCAFPYSLLIFIYDEVRKLILRRYPGGWVEKETY 1048 Y<-* Y KIAA0778 1049 Y 1049 TIGR01494: domain 1 of 5, from 162 to 254: score 87.2, E = 1.6e-23 *->viliivllfvlletlqkeaaedalrslkdkelnpqkvtvlrnggve. v++++v++ +++++q+ +++++++s k+ + pq + v+r+g++++ KIAA0778 162 VLAAVVIVTGCFSYYQEAKSSKIMDSFKN--MVPQQALVIREGEKMq 206 isskdlvvGDiVlvkkGdivPADgvLLsg.scyVdessLTGEsnpvlK<- i ++++vvGD+V+vk Gd+vPAD++++s++ c+Vd ssLTGEs+p ++ KIAA0778 207 INAEEVVVGDLVEVKGGDRVPADLRIISShGCKVDNSSLTGESEPQTR 254 * KIAA0778 - - TIGR01494: domain 2 of 5, from 306 to 431: score 113.8, E = 1.7e-31 *->fektplqrkldrlafifilfllllalsvflltliglwtffkiflral +++tp+ + ++ +++++++++l++s+f+l+li ++++++++++ + KIAA0778 306 VGRTPIAMEIEHFIQLITGVAVFLGVSFFVLSLILGYSWLEAVIFLI 352 illviaiPiaLpvavtialavgdkrma...ilvrslnalEelGqvdyics +++v+ +P++L ++vt++l++ +krma++++lv++l+a+E+lG+ ++ics KIAA0778 353 GIIVANVPEGLLATVTVCLTLTAKRMArknCLVKNLEAVETLGSTSTICS 402 DKTGTLTenkmtfkkvyiggeyqagsPdE<-* DKTGTLT+n mt+ +++ ++ + + +E KIAA0778 403 DKTGTLTQNRMTVAHMWFDNQIHEADTTE 431 TIGR01494: domain 4 of 5, from 610 to 660: score 64.7, E = 3.2e-17 *->ellGltaieDpLredvketIeeLkraGikvwMlTGDnveTAiaIAke +++Gl+ + Dp+r+ v++++ +++ aGikv+M+TGD+++TA+aIAk KIAA0778 610 CFVGLMSMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKG 656 cglf<-* +g++ KIAA0778 657 VGII 660 TIGR01494: domain 5 of 5, from 715 to 834: score 149.4, E = 3e-42 *->lfARvsPeqKaeiVellqkrgaiVamiGDGaNDapALkaADVGiaig +fAR+sP+qK+ iVe +q++gaiVa++GDG+ND pALk+AD+Gia+g KIAA0778 715 VFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGIAMG 761 ......AkaaaDivltddnlslivlllvhGRwtykrikklilyalyynli ++++ +k+aaD++l+ddn+++iv+ +++GR +++++kk i y+l++n+ KIAA0778 762 isgsdvSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIP 811 liillfvlsvinllftslpalal<-* +i +++++++ n ++ + + +l KIAA0778 812 EITPFLLFIIANIPLPLGTVTIL 834 //