hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12455289/chunk_1/iprscan-20080502-12455289.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0777 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00326 226.7 2e-63 3 SM00459 127.0 2.1e-33 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00459 1/1 138 188 .. 1 55 [] 127.0 2.1e-33 SM00326 1/3 937 992 .. 1 58 [] 91.7 8.5e-23 SM00326 2/3 1012 1069 .. 1 58 [] 77.6 1.5e-18 SM00326 3/3 1115 1171 .] 1 58 [] 57.4 1.9e-12 Alignments of top-scoring domains: SM00459: domain 1 of 1, from 138 to 188: score 127.0, E = 2.1e-33 *->vrnvdypgivpvDEsGIPlasPrSsveRpkDmSQWYrtMFKQIHrkg +++++ypgi+pvDEsGIP+a+ r++v+RpkD WY+tMFKQIH+++ KIAA0777 138 IKAPHYPGIGPVDESGIPTAI-RTTVDRPKD---WYKTMFKQIHMVH 180 kpDddnDv<-* kpDdd+D+ KIAA0777 181 KPDDDTDM 188 SM00326: domain 1 of 3, from 937 to 992: score 91.7, E = 8.5e-23 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG ++A+YD++aq++ ELsFkkGD++++l+k+d++W+eGe++ G++G KIAA0777 937 LPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHH--GRVG 981 lfPsnYVeeie<-* +fP +YVe+++ KIAA0777 982 IFPISYVEKLT 992 SM00326: domain 2 of 3, from 1012 to 1069: score 77.6, E = 1.5e-18 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG ++++A+Y+++a++ ELs++kGD +++l+++d++W+eG++ +t+++G KIAA0777 1012 GEAIAKYNFNADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQG 1058 lfPsnYVeeie<-* +fP +YVe+++ KIAA0777 1059 IFPVSYVEVVK 1069 SM00326: domain 3 of 3, from 1115 to 1171: score 57.4, E = 1.9e-12 *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG e ++AlY+y+++nedEL +++ D+i v ek+ddgW+ G+ +rt G KIAA0777 1115 EPFQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFG 1161 lfPsnYVeeie<-* fP+nYV + KIAA0777 1162 TFPGNYV-KRL 1171 //