hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12455289/chunk_1/iprscan-20080502-12455289.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0777 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00018.18.ls SH3 domain 197.7 2.5e-56 3 PF00018.18.fs SH3 domain 191.9 1.4e-54 3 PF02208.7.ls Sorbin homologous domain 144.9 1.9e-40 1 PF02208.7.fs Sorbin homologous domain 142.9 7.7e-40 1 PF07653.7.ls Variant SH3 domain 105.6 1.4e-28 3 PF07653.7.fs Variant SH3 domain 100.2 3.1e-28 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02208.7.fs 1/1 138 187 .. 1 50 [] 142.9 7.7e-40 PF02208.7.ls 1/1 138 187 .. 1 50 [] 144.9 1.9e-40 PF00018.18.fs 1/3 937 991 .. 1 59 [] 71.4 9.5e-19 PF00018.18.ls 1/3 937 991 .. 1 59 [] 73.3 7.2e-19 PF07653.7.ls 1/3 938 991 .. 1 69 [] 55.5 1.7e-13 PF07653.7.fs 1/3 938 991 .. 1 69 [] 53.7 8e-15 PF00018.18.ls 2/3 1012 1068 .. 1 59 [] 69.7 8.8e-18 PF00018.18.fs 2/3 1012 1068 .. 1 59 [] 67.7 9.6e-18 PF07653.7.ls 2/3 1013 1068 .. 1 69 [] 29.0 1.6e-05 PF07653.7.fs 2/3 1013 1068 .. 1 69 [] 27.2 3.4e-07 PF00018.18.fs 3/3 1115 1171 .] 1 59 [] 52.8 1.2e-13 PF00018.18.ls 3/3 1115 1171 .] 1 59 [] 54.8 2.7e-13 PF07653.7.ls 3/3 1116 1171 .] 1 69 [] 21.2 0.0018 Alignments of top-scoring domains: PF02208.7.fs: domain 1 of 1, from 138 to 187: score 142.9, E = 7.7e-40 *->vkaaqdlsivsvDEvGIPtAlRtTvdRsKDWYKTMFKQIHklnkPDd +ka+++++i++vDE+GIPtA+RtTvdR+KDWYKTMFKQIH+++kPDd KIAA0777 138 IKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDD 184 DsD<-* D+D KIAA0777 185 DTD 187 PF02208.7.ls: domain 1 of 1, from 138 to 187: score 144.9, E = 1.9e-40 *->vkaaqdlsivsvDEvGIPtAlRtTvdRsKDWYKTMFKQIHklnkPDd +ka+++++i++vDE+GIPtA+RtTvdR+KDWYKTMFKQIH+++kPDd KIAA0777 138 IKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDD 184 DsD<-* D+D KIAA0777 185 DTD 187 PF00018.18.fs: domain 1 of 3, from 937 to 991: score 71.4, E = 9.5e-19 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A YD++a++s ELsFkkGD++++l k d +W++g+ + G+ KIAA0777 937 LPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQ-NWYEGEHH---GR 979 eGliPsNYVepv<-* +G++P +YVe+ KIAA0777 980 VGIFPISYVEKL 991 PF00018.18.ls: domain 1 of 3, from 937 to 991: score 73.3, E = 7.2e-19 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A YD++a++s ELsFkkGD++++l k d +W++g+ + G+ KIAA0777 937 LPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQ-NWYEGEHH---GR 979 eGliPsNYVepv<-* +G++P +YVe+ KIAA0777 980 VGIFPISYVEKL 991 PF07653.7.ls: domain 1 of 3, from 938 to 991: score 55.5, E = 1.7e-13 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe +++a+ d++a + e Ls+kkGd+v+++ k d +w+e KIAA0777 938 PAKAVYDFKA-QTSKE------LSFKKGDTVYIL----RKIDQNWYE 973 geslggGrrrRGlvPssaveel<-* ge +Gr+ G +P s+ve+l KIAA0777 974 GEH--HGRV--GIFPISYVEKL 991 PF07653.7.fs: domain 1 of 3, from 938 to 991: score 53.7, E = 8e-15 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe +++a+ d++a + e Ls+kkGd+v+++ k d +w+e KIAA0777 938 PAKAVYDFKA-QTSKE------LSFKKGDTVYIL----RKIDQNWYE 973 geslggGrrrRGlvPssaveel<-* ge +Gr+ G +P s+ve+l KIAA0777 974 GEH--HGRV--GIFPISYVEKL 991 PF00018.18.ls: domain 2 of 3, from 1012 to 1068: score 69.7, E = 8.8e-18 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A+Y ++a + ELs++kGD +++l+++d +W++g+ gt+ + KIAA0777 1012 GEAIAKYNFNADTNVELSLRKGDRVILLKRVDQ-NWYEGKIPGTN-R 1056 eGliPsNYVepv<-* +G++P++YVe v KIAA0777 1057 QGIFPVSYVEVV 1068 PF00018.18.fs: domain 2 of 3, from 1012 to 1068: score 67.7, E = 9.6e-18 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++A+Y ++a + ELs++kGD +++l+++d +W++g+ gt+ + KIAA0777 1012 GEAIAKYNFNADTNVELSLRKGDRVILLKRVDQ-NWYEGKIPGTN-R 1056 eGliPsNYVepv<-* +G++P++YVe v KIAA0777 1057 QGIFPVSYVEVV 1068 PF07653.7.ls: domain 2 of 3, from 1013 to 1068: score 29.0, E = 1.6e-05 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww ++a +++a + e Lsl+kGd v ++ k+ d++w+ KIAA0777 1013 EAIAKYNFNA-DTNVE------LSLRKGDRVILL-----KRVDqNWY 1047 eg.eslggGrrrRGlvPssaveel<-* eg+ g +r G +P s+ve++ KIAA0777 1048 EGkIP-GTNRQ--GIFPVSYVEVV 1068 PF07653.7.fs: domain 2 of 3, from 1013 to 1068: score 27.2, E = 3.4e-07 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww ++a +++a + e Lsl+kGd v ++ k+ d++w+ KIAA0777 1013 EAIAKYNFNA-DTNVE------LSLRKGDRVILL-----KRVDqNWY 1047 eg.eslggGrrrRGlvPssaveel<-* eg+ g +r G +P s+ve++ KIAA0777 1048 EGkIP-GTNRQ--GIFPVSYVEVV 1068 PF00018.18.fs: domain 3 of 3, from 1115 to 1171: score 52.8, E = 1.2e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk + ++ALY Y++r++dEL +++ Dvi v ek dd gW g + +t+ KIAA0777 1115 EPFQALYNYTPRNEDELELRESDVIDVMEKCDD-GWFVGTSRRTK-F 1159 eGliPsNYVepv<-* +G +P NYV KIAA0777 1160 FGTFPGNYVKRL 1171 PF00018.18.ls: domain 3 of 3, from 1115 to 1171: score 54.8, E = 2.7e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk + ++ALY Y++r++dEL +++ Dvi v ek dd gW g + +t+ KIAA0777 1115 EPFQALYNYTPRNEDELELRESDVIDVMEKCDD-GWFVGTSRRTK-F 1159 eGliPsNYVepv<-* +G +P NYV KIAA0777 1160 FGTFPGNYVKRL 1171 PF07653.7.ls: domain 3 of 3, from 1116 to 1171: score 21.2, E = 0.0018 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe +++a+ +y++ ++++e L l++ dv+ V +k ddgw KIAA0777 1116 PFQALYNYTP-RNEDE------LELRESDVIDVM----EKCDDGWFV 1151 geslggGrrrRGlvPssaveel<-* g+s ++ + G +P ++v+ l KIAA0777 1152 GTS--RRTKFFGTFPGNYVKRL 1171 //