# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk05279.fasta.huge -Q ../query/KIAA0777.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0777, 1171 aa
 vs ./tmplib.23663 library

1986334 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.2721+/-0.00935; mu= -8.2305+/- 0.635
 mean_var=360.0419+/-87.085, 0's: 0 Z-trim: 7  B-trim: 0 in 0/40
 Lambda= 0.067592

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1296  ( 815 res)   fg03576                     ( 815)  976 110.0 1.5e-24


>>KIAA1296  ( 815 res)   fg03576                          (815 aa)
 initn: 1481 init1: 344 opt: 976  Z-score: 532.4  bits: 110.0 E(): 1.5e-24
Smith-Waterman score: 976;  59.004% identity (77.778% similar) in 261 aa overlap (917-1171:561-813)

        890       900       910       920       930       940      
KIAA07 DVDTANSSCHHQDRGGALQDRESPRSYSSTLTDMGRSAPRERRGTPEKEKLPAKAVYDFK
                                     : ..  .: : . :.   :  ::.: .:::
KIAA12 EQEEADIAARRHTGVIPTHHQFITNERFGDLLNIDDTAKR-KSGS---EMRPARAKFDFK
              540       550       560       570           580      

        950       960       970       980       990      1000      
KIAA07 AQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPA
       ::: ::: ..::: ::: ..:::::::::::::::::: .:.: : : ::::: .  : .
KIAA12 AQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLPPAEKAQPKKLTP-V
        590       600       610       620       630       640      

       1010      1020      1030      1040      1050      1060      
KIAA07 QPGEIGEAIAKYNFNADTNVELSLRKGDRVILLKRVDQNWYEGKIPGTNRQGIFPVSYVE
       :  : ::::::.:::.::.::.:.:::.:. ::..::.:::::.::::.::::::..::.
KIAA12 QVLEYGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD
         650       660       670       680       690       700     

       1070       1080      1090      1100         1110        1120
KIAA07 VVKKN-TKGAEDYPDPPIPHSYSSDRIHSLSSNKPQ---RPVFTHENIQGGGEPF--QAL
       :.:.  .:.  :: :  .: : : .:  . : ..::   : : : .  : . . :  :::
KIAA12 VIKRPLVKNPVDYMD--LPFSSSPSRSATASPQQPQAQQRRV-TPDRSQTSQDLFSYQAL
         710       720         730       740        750       760  

             1130      1140      1150      1160      1170   
KIAA07 YNYTPRNEDELELRESDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL  
       :.: :.:.::::::..:..::::::::::::::::::: :::::::::: :  
KIAA12 YSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPLYL
            770       780       790       800       810     




1171 residues in 1 query   sequences
1986334 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:15:34 2008 done: Thu Dec 18 15:15:35 2008
 Total Scan time:  0.730 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]