# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/bh00283.fasta.huge -Q ../query/KIAA0774.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0774, 1381 aa vs ./tmplib.23663 library 1986124 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 12.9325+/-0.0104; mu= -22.0758+/- 0.697 mean_var=502.6768+/-122.588, 0's: 0 Z-trim: 7 B-trim: 5 in 1/39 Lambda= 0.057204 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1288 ( 1245 res) hh13551(revised) (1245) 854 86.2 3.8e-17 >>KIAA1288 ( 1245 res) hh13551(revised) (1245 aa) initn: 811 init1: 401 opt: 854 Z-score: 399.6 bits: 86.2 E(): 3.8e-17 Smith-Waterman score: 854; 31.959% identity (63.918% similar) in 582 aa overlap (816-1381:680-1245) 790 800 810 820 830 840 KIAA07 AMSRLPSAKSRILIASQRSSASAIHPPGPITTATSLYSSDPSADLKKASSSNAAKSNLPK ::. :. : :.. .. .: : . : KIAA12 SMEKQELKQEIMNETFEYGSLFLGSASKTTTTSGRNISKPDSCGLRQIAAPKA-KVGPPV 650 660 670 680 690 700 850 860 870 880 890 900 KIAA07 SGLRPPGYSRLPAAKLAAFG--FVRSSSVSSVSSTQSGDSAQPEQGRPATRSTFGNEEQP : :: . .: :.: :. . : :: .. .: ....:. . :: .: .. ..: KIAA12 SCLRRNSDNRNPSADRAVSPQRIRRVSSSGKPTSLKTAQSSWVNLPRPLPKSK-ASLKSP 710 720 730 740 750 760 910 920 930 940 950 960 KIAA07 VLK--ASLPS-KDTPKGAGRVAPPASSSVTAPRRSLLPAPKSTSTPAGTKKDAPKDQDTN .:. .: :: .: . . . ...... . : : . .:. : . .. KIAA12 ALRRTGSTPSIASTHSELSTYSNNSGNAAVIKYEEKPPKPAFQNGSSGSFYLKPLVSRAH 770 780 790 800 810 820 970 980 990 1000 1010 KIAA07 KPAVSSPKRVAASTTKLHSP--GYPKQRTAAARN-GFPPKPDPQAREAERQLVL-RLKER ...: . . : .: . . :.: :. . :. :.: :. : : . : . KIAA12 VHLMKTPPK-GPSRKNLFTALNAVEKSRQKNPRSLCIQPQTAPDALPPEKTLELTQYKTK 830 840 850 860 870 880 1020 1030 1040 1050 1060 1070 KIAA07 CEQQTRQLGVAQGELKRAI-CG---FDALAVATQHFFRKNESALVKEKELSIELANIRDE ::.:. : .::. . :: :.::.:. ::.. . : :: ..: :: ::.:.: : KIAA12 CENQS---GFIL-QLKQLLACGNTKFEALTVVIQHLLSEREEALKQHKTLSQELVNLRGE 890 900 910 920 930 940 1080 1090 1100 1110 1120 1130 KIAA07 VAFHTAKCEKLQKEKEELERRFEDEVKRLGWQQQAELQELEERLQLQFEAEMARLQEEHG .. .. ::::.: ..::. .: :. :.::: : :.::. . :. .:.. . KIAA12 LVTASTTCEKLEKARNELQTVYEAFVQ----QHQAEKTERENRLKEFYTREYEKLRDTYI 950 960 970 980 990 1140 1150 1160 1170 1180 1190 KIAA07 DQLLSIRCQHQEQVEDLTASHDAALLEMENNHTVAITILQDDHDHKVQELMSTHELEKKE .. . . : ::: ..:.:.:... ::.: .:. . .:. .. ...:. . ::.::: KIAA12 EEAEKYKMQLQEQFDNLNAAHETSKLEIEASHSEKLELLKKAYEASLSEIKKGHEIEKKS 1000 1010 1020 1030 1040 1050 1200 1210 1220 1230 1240 1250 KIAA07 LEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIALAPYQHLEEDMK ::. . . . ::. :.. : ....: .. . :. .. ..:. .. ..::.... KIAA12 LEDLLSEKQESLEKQINDLKSENDALNEKLKSEEQ--KRRAREKANLKNPQIMYLEQELE 1060 1070 1080 1090 1100 1110 1260 1270 1280 1290 1300 1310 KIAA07 SLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDLKARIDQNTVVTRQ ::: :::.::...:.:. :....:::...: : .:.. .::.::.::::.:.. ...:: KIAA12 SLKAVLEIKNEKLHQQDIKLMKMEKLVDNNTALVDKLKRFQQENEELKARMDKHMAISRQ 1120 1130 1140 1150 1160 1170 1320 1330 1340 1350 1360 KIAA07 LSEENANLQEYVEKETQEKKRLSRTNEELLWKLQTGDPTSPIKLSPTS---PVYRGSSSG :: :.: ::: .:::.. .:::: ::::::::..:: :: : :::: :. .:: KIAA12 LSTEQAVLQESLEKESKVNKRLSMENEELLWKLHNGDLCSP-KRSPTSSAIPLQSPRNSG 1180 1190 1200 1210 1220 1230 1370 1380 KIAA07 PSSPARVSTTPR : :. : .:: KIAA12 -SFPSP-SISPR 1240 1381 residues in 1 query sequences 1986124 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:15:28 2008 done: Thu Dec 18 15:15:29 2008 Total Scan time: 0.830 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]