hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12252390/chunk_1/iprscan-20080502-12252390.nocrc
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Query sequence: KIAA0765
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    104.9    2.2e-28   3
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     99.1      5e-27   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/3     452   522 ..     1    74 []    35.3  3.9e-09
PF00076.12.ls   1/3     452   522 ..     1    74 []    37.2  5.3e-08
PF00076.12.fs   2/3     566   636 ..     1    74 []    30.5  8.4e-08
PF00076.12.ls   2/3     566   636 ..     1    74 []    32.5  1.4e-06
PF00076.12.fs   3/3     878   949 ..     1    74 []    33.3  1.4e-08
PF00076.12.ls   3/3     878   949 ..     1    74 []    35.2  2.1e-07

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 3, from 452 to 522: score 35.3, E = 3.9e-09
                   *->lfVgNLppdtteedLkdlFskfGpi.esikivrDttretgrskGfaF
                      ++ ++Lp+++  + + d+F+k   ++ si i +     +g+  G +F
    KIAA0765   452    VYLKGLPFEAENKHVIDFFKKLDIVeDSIYIAYG---PNGKATGEGF 495  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   VeF +e d ++Al   ++++ g+r + v   
    KIAA0765   496 VEFRNEADYKAALC-RHKQYMGNRFIQV    522  

PF00076.12.ls: domain 1 of 3, from 452 to 522: score 37.2, E = 5.3e-08
                   *->lfVgNLppdtteedLkdlFskfGpi.esikivrDttretgrskGfaF
                      ++ ++Lp+++  + + d+F+k   ++ si i +     +g+  G +F
    KIAA0765   452    VYLKGLPFEAENKHVIDFFKKLDIVeDSIYIAYG---PNGKATGEGF 495  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   VeF +e d ++Al   ++++ g+r + v   
    KIAA0765   496 VEFRNEADYKAALC-RHKQYMGNRFIQV    522  

PF00076.12.fs: domain 2 of 3, from 566 to 636: score 30.5, E = 8.4e-08
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                        ++N+p+++t+ d+ ++ + ++  e++  v     ++g+  G a V
    KIAA0765   566    AHITNIPFSITKMDVLQFLEGIPVDENAVHVLV--DNNGQGLGQALV 610  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F++e+dA+k  + l+ k+l+gre  v   
    KIAA0765   611 QFKNEDDARKSER-LHRKKLNGREAFV    636  

PF00076.12.ls: domain 2 of 3, from 566 to 636: score 32.5, E = 1.4e-06
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                        ++N+p+++t+ d+ ++ + ++  e++  v     ++g+  G a V
    KIAA0765   566    AHITNIPFSITKMDVLQFLEGIPVDENAVHVLV--DNNGQGLGQALV 610  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F++e+dA+k  + l+ k+l+gre  v   
    KIAA0765   611 QFKNEDDARKSER-LHRKKLNGREAFV    636  

PF00076.12.fs: domain 3 of 3, from 878 to 949: score 33.3, E = 1.4e-08
                   *->lfVgNLppdtteedLkdlFskfGpi.esikivrDttretgrskGfaF
                      + V N p+ ++ +++ d+F  +  i+ s+ ++++   e+g + G a 
    KIAA0765   878    IKVQNMPFTVSIDEILDFFYGYQVIpGSVCLKYN---EKGMPTGEAM 921  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   V Fe+ ++A++A+  ln + +g+r+++    
    KIAA0765   922 VAFESRDEATAAVIDLNDRPIGSRKVKL    949  

PF00076.12.ls: domain 3 of 3, from 878 to 949: score 35.2, E = 2.1e-07
                   *->lfVgNLppdtteedLkdlFskfGpi.esikivrDttretgrskGfaF
                      + V N p+ ++ +++ d+F  +  i+ s+ ++++   e+g + G a 
    KIAA0765   878    IKVQNMPFTVSIDEILDFFYGYQVIpGSVCLKYN---EKGMPTGEAM 921  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   V Fe+ ++A++A+  ln + +g+r+++    
    KIAA0765   922 VAFESRDEATAAVIDLNDRPIGSRKVKL    949  

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