hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12184087/chunk_1/iprscan-20080502-12184087.nocrc
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Query sequence: KIAA0761
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05934.2.ls Mid-1-related chloride channel (MCLC)         1357.4          0   1
PF05934.2.fs Mid-1-related chloride channel (MCLC)         1355.6          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05934.2.fs   1/1       3   551 .]     1   576 []  1355.6        0
PF05934.2.ls   1/1       3   551 .]     1   576 []  1357.4        0

Alignments of top-scoring domains:
PF05934.2.fs: domain 1 of 1, from 3 to 551: score 1355.6, E = 0
                   *->mrLlLlvaLlLvavYaDydDdWIDPsDMLNYDAASGkMkkKPqvEst
                      ++LlL+++LlLva+Ya +dDdWIDP+DMLNYDAASG+M+k       
    KIAA0761     3    CSLLLCECLLLVAGYA-HDDDWIDPTDMLNYDAASGTMRK------- 41   

                   qsYYsvEntvsqDAsQakaqkanEkdvsPDlsCadEisEyktKLdsLkyk
                                 sQak+++++EkdvsPDlsCadEisE+++KLdsL+yk
    KIAA0761    42 --------------SQAKYGISGEKDVSPDLSCADEISECYHKLDSLTYK 77   

                   ldECEkKkrEdykSkSnavFkRYLNKILIEAGklGLPDEsYPKAHYDAEv
                   +dECEkKkrEdy+S+Sn+vF+RYLNKILIEAGklGLPDE     HYDAE+
    KIAA0761    78 IDECEKKKREDYESQSNPVFRRYLNKILIEAGKLGLPDENKGDMHYDAEI 127  

                   vFtmEmLqEiqsFLnnGDWnvGALDDALsstLvqFKHHnEEEWKWKFEDs
                   +   E L Eiq FLn  DW  GALDDALs  L+ FK H  E WKW+FEDs
    KIAA0761   128 ILKRETLLEIQKFLNGEDWKPGALDDALSDILINFKFHDFETWKWRFEDS 177  

                   FGvDvYtLFmLiLCvLCLvKLiAtEiWtHiGWFtqLKRLLiLstvisFGW
                   FGvD Y + m++LC LC+v L+AtE+Wt + W+tqL+R+Li+s   s GW
    KIAA0761   178 FGVDPYNVLMVLLCLLCIVVLVATELWTYVRWYTQLRRVLIISFLFSLGW 227  

                   nWmYLYKvAFAERqAELAKLqDFDK.CsqKisWsEsLFDWmKGAAtFqnD
                   nWmYLYK AFA  qAE+AK+      C++K+ W  s+++W +   t++ D
    KIAA0761   228 NWMYLYKLAFAQHQAEVAKMEPLNNvCAKKMDWTGSIWEWFRSSWTYKDD 277  

                   PCEDYFKALivsPtLmvPPtKALAlTFTtFvTEPLKHIGKGiGEFlkALl
                   PC  Y+  L+v P  +vPPtKALA+TFTtFvTEPLKHIGKG+GEF+kAL+
    KIAA0761   278 PCQKYYELLLVNPIWLVPPTKALAVTFTTFVTEPLKHIGKGTGEFIKALM 327  

                   kEIPlllqlPVLIiiAlllLaFfYGAGkaVmnPvnllRrltGPErEkPla
                   kEIP+ll+lPVLIi+Al++L+F+YGAGk+V    ++lR+++GPE+E+P+a
    KIAA0761   328 KEIPALLHLPVLIIMALAILSFCYGAGKSV----HVLRHIGGPESEPPQA 373  

                   lrPrdrrRkreIdYRPDGGAGDADvrvrgalGPtEqGPYAKtYEGRRell
                   lrPrdrrR++eIdYRPDGGAGDAD+++rg++GPtEqGPYAKtYEGRRe+l
    KIAA0761   374 LRPRDRRRQEEIDYRPDGGAGDADFHYRGQMGPTEQGPYAKTYEGRREIL 423  

                   RdrDVDLRFqtGnKsvevlkafdldDidarenPtVvPsHKsPvldadPkd
                   R+rDVDLRFqtGnKs+evl+afd++D++are+PtVvPsHKsPvld++Pk+
    KIAA0761   424 RERDVDLRFQTGNKSPEVLRAFDVPDAEAREHPTVVPSHKSPVLDTKPKE 473  

                   TGqvksenTgkelvtEdssikKsvKESrnDergNTEsseAkekAqLKsEA
                   TG++++e+T+ke++tE+s+++K+v  S++D++gNTE+s+A+ekAqLKsEA
    KIAA0761   474 TGGILGEGTPKESSTESSQSAKPV--SGQDTSGNTEGSPAAEKAQLKSEA 521  

                   AGsPDqGstYsPARGvAGPRgedPVvetlr<-*
                   AGsPDqGstYsPARGvAGPRg+dPV+++++   
    KIAA0761   522 AGSPDQGSTYSPARGVAGPRGQDPVSSPCG    551  

PF05934.2.ls: domain 1 of 1, from 3 to 551: score 1357.4, E = 0
                   *->mrLlLlvaLlLvavYaDydDdWIDPsDMLNYDAASGkMkkKPqvEst
                      ++LlL+++LlLva+Ya +dDdWIDP+DMLNYDAASG+M+k       
    KIAA0761     3    CSLLLCECLLLVAGYA-HDDDWIDPTDMLNYDAASGTMRK------- 41   

                   qsYYsvEntvsqDAsQakaqkanEkdvsPDlsCadEisEyktKLdsLkyk
                                 sQak+++++EkdvsPDlsCadEisE+++KLdsL+yk
    KIAA0761    42 --------------SQAKYGISGEKDVSPDLSCADEISECYHKLDSLTYK 77   

                   ldECEkKkrEdykSkSnavFkRYLNKILIEAGklGLPDEsYPKAHYDAEv
                   +dECEkKkrEdy+S+Sn+vF+RYLNKILIEAGklGLPDE     HYDAE+
    KIAA0761    78 IDECEKKKREDYESQSNPVFRRYLNKILIEAGKLGLPDENKGDMHYDAEI 127  

                   vFtmEmLqEiqsFLnnGDWnvGALDDALsstLvqFKHHnEEEWKWKFEDs
                   +   E L Eiq FLn  DW  GALDDALs  L+ FK H  E WKW+FEDs
    KIAA0761   128 ILKRETLLEIQKFLNGEDWKPGALDDALSDILINFKFHDFETWKWRFEDS 177  

                   FGvDvYtLFmLiLCvLCLvKLiAtEiWtHiGWFtqLKRLLiLstvisFGW
                   FGvD Y + m++LC LC+v L+AtE+Wt + W+tqL+R+Li+s   s GW
    KIAA0761   178 FGVDPYNVLMVLLCLLCIVVLVATELWTYVRWYTQLRRVLIISFLFSLGW 227  

                   nWmYLYKvAFAERqAELAKLqDFDK.CsqKisWsEsLFDWmKGAAtFqnD
                   nWmYLYK AFA  qAE+AK+      C++K+ W  s+++W +   t++ D
    KIAA0761   228 NWMYLYKLAFAQHQAEVAKMEPLNNvCAKKMDWTGSIWEWFRSSWTYKDD 277  

                   PCEDYFKALivsPtLmvPPtKALAlTFTtFvTEPLKHIGKGiGEFlkALl
                   PC  Y+  L+v P  +vPPtKALA+TFTtFvTEPLKHIGKG+GEF+kAL+
    KIAA0761   278 PCQKYYELLLVNPIWLVPPTKALAVTFTTFVTEPLKHIGKGTGEFIKALM 327  

                   kEIPlllqlPVLIiiAlllLaFfYGAGkaVmnPvnllRrltGPErEkPla
                   kEIP+ll+lPVLIi+Al++L+F+YGAGk+V    ++lR+++GPE+E+P+a
    KIAA0761   328 KEIPALLHLPVLIIMALAILSFCYGAGKSV----HVLRHIGGPESEPPQA 373  

                   lrPrdrrRkreIdYRPDGGAGDADvrvrgalGPtEqGPYAKtYEGRRell
                   lrPrdrrR++eIdYRPDGGAGDAD+++rg++GPtEqGPYAKtYEGRRe+l
    KIAA0761   374 LRPRDRRRQEEIDYRPDGGAGDADFHYRGQMGPTEQGPYAKTYEGRREIL 423  

                   RdrDVDLRFqtGnKsvevlkafdldDidarenPtVvPsHKsPvldadPkd
                   R+rDVDLRFqtGnKs+evl+afd++D++are+PtVvPsHKsPvld++Pk+
    KIAA0761   424 RERDVDLRFQTGNKSPEVLRAFDVPDAEAREHPTVVPSHKSPVLDTKPKE 473  

                   TGqvksenTgkelvtEdssikKsvKESrnDergNTEsseAkekAqLKsEA
                   TG++++e+T+ke++tE+s+++K+v  S++D++gNTE+s+A+ekAqLKsEA
    KIAA0761   474 TGGILGEGTPKESSTESSQSAKPV--SGQDTSGNTEGSPAAEKAQLKSEA 521  

                   AGsPDqGstYsPARGvAGPRgedPVvetlr<-*
                   AGsPDqGstYsPARGvAGPRg+dPV+++++   
    KIAA0761   522 AGSPDQGSTYSPARGVAGPRGQDPVSSPCG    551  

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