hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12165507/chunk_1/iprscan-20080502-12165507.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0760 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 675.6 1.5e-198 30 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/30 7 28 .. 1 23 [] 15.3 5.9 SM00355 2/30 78 100 .. 1 23 [] 27.8 0.0015 SM00355 3/30 106 128 .. 1 23 [] 21.1 0.16 SM00355 4/30 134 156 .. 1 23 [] 23.8 0.025 SM00355 5/30 162 184 .. 1 23 [] 29.6 0.00042 SM00355 6/30 203 226 .. 1 23 [] 23.2 0.037 SM00355 7/30 235 258 .. 1 23 [] 20.7 0.21 SM00355 8/30 263 285 .. 1 23 [] 18.4 1 SM00355 9/30 349 373 .. 1 23 [] 21.2 0.15 SM00355 10/30 381 404 .. 1 23 [] 19.7 0.42 SM00355 11/30 420 443 .. 1 23 [] 28.5 0.00092 SM00355 12/30 457 480 .. 1 23 [] 23.5 0.03 SM00355 13/30 503 528 .. 1 23 [] 16.2 4.6 SM00355 14/30 572 594 .. 1 23 [] 26.5 0.0036 SM00355 15/30 602 624 .. 1 23 [] 22.3 0.067 SM00355 16/30 632 655 .. 1 23 [] 29.2 0.00058 SM00355 17/30 660 683 .. 1 23 [] 25.3 0.0082 SM00355 18/30 690 713 .. 1 23 [] 25.9 0.0056 SM00355 19/30 721 743 .. 1 23 [] 24.4 0.016 SM00355 20/30 747 770 .. 1 23 [] 22.8 0.046 SM00355 21/30 826 849 .. 1 23 [] 16.1 4.8 SM00355 22/30 870 892 .. 1 23 [] 29.0 0.00065 SM00355 23/30 899 921 .. 1 23 [] 28.8 0.00075 SM00355 24/30 928 950 .. 1 23 [] 15.4 5.7 SM00355 25/30 960 982 .. 1 23 [] 6.5 58 SM00355 26/30 1060 1083 .. 1 23 [] 26.9 0.0027 SM00355 27/30 1108 1130 .. 1 23 [] 24.3 0.017 SM00355 28/30 1138 1160 .. 1 23 [] 19.0 0.65 SM00355 29/30 1169 1192 .. 1 23 [] 24.6 0.014 SM00355 30/30 1199 1222 .. 1 23 [] 19.5 0.48 Alignments of top-scoring domains: SM00355: domain 1 of 30, from 7 to 28: score 15.3, E = 5.9 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C++ f s +L+ H H KIAA0760 7 YTCDH-CQQDFESLaDLTDHRA-H 28 SM00355: domain 2 of 30, from 78 to 100: score 27.8, E = 0.0015 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C+ksf + + LkrH ++H KIAA0760 78 YPCQF-CDKSFIRLsYLKRHEQIH 100 SM00355: domain 3 of 30, from 106 to 128: score 21.1, E = 0.16 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C++ f++k++ rH++ H KIAA0760 106 FKCTY-CSRLFKHKrSRDRHIKLH 128 SM00355: domain 4 of 30, from 134 to 156: score 23.8, E = 0.025 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C fs+ ++Lk H+++H KIAA0760 134 YHCHE-CEAAFSRSdHLKIHLKTH 156 SM00355: domain 5 of 30, from 162 to 184: score 29.6, E = 0.00042 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C++ fss ++L+ Hm+ H KIAA0760 162 FKCTV-CKRGFSSTsSLQSHMQAH 184 SM00355: domain 6 of 30, from 203 to 226: score 23.2, E = 0.037 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C +fs+ ++L++H+ ++H KIAA0760 203 FMCDY-CEDTFSQTeELEKHVLtRH 226 SM00355: domain 7 of 30, from 235 to 258: score 20.7, E = 0.21 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C+++f +++ L H+ + H KIAA0760 235 LQCIH-CPEVFVDEnTLLAHIHqAH 258 SM00355: domain 8 of 30, from 263 to 285: score 18.4, E = 1 *->ykCpigCgksfssk.aLkrHmrvH<-* +kCp+ C+++fss + H+ +H KIAA0760 263 HKCPM-CPEQFSSVeGVYCHLDSH 285 SM00355: domain 9 of 30, from 349 to 373: score 21.2, E = 0.15 *->ykCpigCg.ksfssk.aLkrHmr.vH<-* y Cp+ C+++ f+s L+ H++++H KIAA0760 349 YSCPY-CSkRDFNSLaVLEIHLKtIH 373 SM00355: domain 10 of 30, from 381 to 404: score 19.7, E = 0.42 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C+i C s ++ +L++H+r+ H KIAA0760 381 HTCQI-CLDSMPTLyNLNEHVRkLH 404 SM00355: domain 11 of 30, from 420 to 443: score 28.5, E = 0.00092 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C++ C++ f + ++L++H+r +H KIAA0760 420 FHCNY-CPEMFADInSLQEHIRvSH 443 SM00355: domain 12 of 30, from 457 to 480: score 23.5, E = 0.03 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C++ f ++++L++H+++ H KIAA0760 457 FFCNQ-CSMGFLTEsSLTEHIQqAH 480 SM00355: domain 13 of 30, from 503 to 528: score 16.2, E = 4.6 *->ykCpigCg..ksfssk.aLkrHmr.vH<-* y Cp+ C ++ f s L++H+++ H KIAA0760 503 YSCPY-CTnsPIFGSIlKLTKHIKeNH 528 SM00355: domain 14 of 30, from 572 to 594: score 26.5, E = 0.0036 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C+ +fs+ ++++ H++ H KIAA0760 572 YPCNQ-CDLKFSNFeSFQTHLKLH 594 SM00355: domain 15 of 30, from 602 to 624: score 22.3, E = 0.067 *->ykCpigCgksfssk.aLkrHmrvH<-* Cp+ C++ f s+++L +H+ vH KIAA0760 602 QACPQ-CKEDFDSQeSLLQHLTVH 624 SM00355: domain 16 of 30, from 632 to 655: score 29.2, E = 0.00058 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C+ C+k+fss ++L++H+ ++H KIAA0760 632 YVCES-CDKQFSSVdDLQKHLLdMH 655 SM00355: domain 17 of 30, from 660 to 683: score 25.3, E = 0.0082 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C++ C+++f sk + + H+ +H KIAA0760 660 YHCTL-CQEVFDSKvSIQVHLAvKH 683 SM00355: domain 18 of 30, from 690 to 713: score 25.9, E = 0.0056 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C+ C++ f+ + +L+ H++++H KIAA0760 690 YRCTA-CNWDFRKEaDLQVHVKhSH 713 SM00355: domain 19 of 30, from 721 to 743: score 24.4, E = 0.016 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + Cg++fs++ +L+ H+ +H KIAA0760 721 HKCIF-CGETFSTEvELQCHITTH 743 SM00355: domain 20 of 30, from 747 to 770: score 22.8, E = 0.046 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C++ C+k f+ L++H+r++H KIAA0760 747 YNCKF-CSKAFHAIiLLEKHLReKH 770 SM00355: domain 21 of 30, from 826 to 849: score 16.1, E = 4.8 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C+i Cg ++ + L++H + H KIAA0760 826 YGCDI-CGAAYTMEvLLQNHRLrDH 849 SM00355: domain 22 of 30, from 870 to 892: score 29.0, E = 0.00065 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C+++f s++ L++H+++H KIAA0760 870 HKCNV-CSRTFFSEnGLREHLQTH 892 SM00355: domain 23 of 30, from 899 to 921: score 28.8, E = 0.00075 *->ykCpigCgksfssk.aLkrHmrvH<-* y Cpi Cg++f+s L++H +H KIAA0760 899 YMCPI-CGERFPSLlTLTEHKVTH 921 SM00355: domain 24 of 30, from 928 to 950: score 15.4, E = 5.7 *->ykCpigCgksfssk.aLkrHmrvH<-* +C i C++ s++++++H ++H KIAA0760 928 GTCRI-CKMPLQSEeEFIEHCQMH 950 SM00355: domain 25 of 30, from 960 to 982: score 6.5, E = 58 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + C ++ +s +Lk H H KIAA0760 960 FRCVV-CMQTVTSTlELKIHGTFH 982 SM00355: domain 26 of 30, from 1060 to 1083: score 26.9, E = 0.0027 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++Cp+ C+ +f s+++L+ Hm+ H KIAA0760 1060 LRCPE-CSVKFESAeDLESHMQvDH 1083 SM00355: domain 27 of 30, from 1108 to 1130: score 24.3, E = 0.017 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + C+++f ++++ + H+ H KIAA0760 1108 YQCIK-CQMTFENErEIQIHVANH 1130 SM00355: domain 28 of 30, from 1138 to 1160: score 19.0, E = 0.65 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C++ f s+ L H+ H KIAA0760 1138 HECKL-CNQMFDSPaKLLCHLIEH 1160 SM00355: domain 29 of 30, from 1169 to 1192: score 24.6, E = 0.014 *->ykCpigCgksfssk.aLkrHmr.vH<-* +kCp+ C +f +++ L++H+ vH KIAA0760 1169 FKCPV-CFTVFVQAnKLQQHIFaVH 1192 SM00355: domain 30 of 30, from 1199 to 1222: score 19.5, E = 0.48 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C++ C+++f +++L++H +++H KIAA0760 1199 YDCSQ-CPQKFFFQtELQNHTMsQH 1222 //