hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12165507/chunk_1/iprscan-20080502-12165507.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0760 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 590.2 1.8e-174 30 PF00096.16.fs Zinc finger, C2H2 type 540.5 1.7e-159 31 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 2/30 78 100 .. 1 24 [] 32.5 1.3e-06 PF00096.16.fs 2/31 78 100 .. 1 24 [] 30.6 2.3e-06 PF00096.16.ls 3/30 106 128 .. 1 24 [] 18.3 0.026 PF00096.16.fs 4/31 134 156 .. 1 24 [] 26.5 2.4e-05 PF00096.16.ls 4/30 134 156 .. 1 24 [] 28.4 2.3e-05 PF00096.16.fs 5/31 162 184 .. 1 24 [] 28.2 8.8e-06 PF00096.16.ls 5/30 162 184 .. 1 24 [] 30.2 6.8e-06 PF00096.16.fs 6/31 203 226 .. 1 24 [] 23.8 0.00011 PF00096.16.ls 6/30 203 226 .. 1 24 [] 25.8 0.00014 PF00096.16.ls 9/30 349 373 .. 1 24 [] 18.0 0.032 PF00096.16.ls 10/30 381 404 .. 1 24 [] 18.0 0.031 PF00096.16.ls 11/30 420 443 .. 1 24 [] 25.3 0.00021 PF00096.16.fs 11/31 420 443 .. 1 24 [] 23.3 0.00015 PF00096.16.ls 14/30 572 594 .. 1 24 [] 23.9 0.00053 PF00096.16.ls 15/30 602 624 .. 1 24 [] 18.6 0.021 PF00096.16.fs 16/31 632 655 .. 1 24 [] 24.0 9.7e-05 PF00096.16.ls 16/30 632 655 .. 1 24 [] 26.0 0.00012 PF00096.16.ls 17/30 660 683 .. 1 24 [] 18.6 0.02 PF00096.16.ls 18/30 690 713 .. 1 24 [] 20.1 0.0074 PF00096.16.ls 19/30 721 743 .. 1 24 [] 19.4 0.012 PF00096.16.ls 21/30 826 849 .. 1 24 [] 19.2 0.014 PF00096.16.ls 22/30 870 892 .. 1 24 [] 22.6 0.0013 PF00096.16.fs 23/31 899 921 .. 1 24 [] 23.9 0.0001 PF00096.16.ls 23/30 899 921 .. 1 24 [] 25.9 0.00013 PF00096.16.ls 26/30 1060 1083 .. 1 24 [] 23.1 0.00095 PF00096.16.ls 28/30 1138 1160 .. 1 24 [] 19.2 0.014 PF00096.16.ls 29/30 1169 1192 .. 1 24 [] 22.1 0.0018 PF00096.16.ls 30/30 1199 1222 .. 1 24 [] 19.4 0.012 Alignments of top-scoring domains: PF00096.16.ls: domain 2 of 30, from 78 to 100: score 32.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C+ksF r s LkrH ++H KIAA0760 78 YPCQ-FCDKSFIRLSYLKRHEQIH 100 PF00096.16.fs: domain 2 of 31, from 78 to 100: score 30.6, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C+ksF r s LkrH ++H KIAA0760 78 YPCQ-FCDKSFIRLSYLKRHEQIH 100 PF00096.16.ls: domain 3 of 30, from 106 to 128: score 18.3, E = 0.026 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C + F++k + rH++ H KIAA0760 106 FKCT-YCSRLFKHKRSRDRHIKLH 128 PF00096.16.fs: domain 4 of 31, from 134 to 156: score 26.5, E = 2.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C +Fsr+++Lk Hl+tH KIAA0760 134 YHCH-ECEAAFSRSDHLKIHLKTH 156 PF00096.16.ls: domain 4 of 30, from 134 to 156: score 28.4, E = 2.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C +Fsr+++Lk Hl+tH KIAA0760 134 YHCH-ECEAAFSRSDHLKIHLKTH 156 PF00096.16.fs: domain 5 of 31, from 162 to 184: score 28.2, E = 8.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C++ Fs+ s+L++H++ H KIAA0760 162 FKCT-VCKRGFSSTSSLQSHMQAH 184 PF00096.16.ls: domain 5 of 30, from 162 to 184: score 30.2, E = 6.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C++ Fs+ s+L++H++ H KIAA0760 162 FKCT-VCKRGFSSTSSLQSHMQAH 184 PF00096.16.fs: domain 6 of 31, from 203 to 226: score 23.8, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ +C +Fs+ ++L++H t+H KIAA0760 203 FMCD-YCEDTFSQTEELEKHVLTrH 226 PF00096.16.ls: domain 6 of 30, from 203 to 226: score 25.8, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ +C +Fs+ ++L++H t+H KIAA0760 203 FMCD-YCEDTFSQTEELEKHVLTrH 226 PF00096.16.ls: domain 9 of 30, from 349 to 373: score 18.0, E = 0.032 *->ykCpfdCg.ksFsrksnLkrHlrt.H<-* y+Cp +C ++ F++ + L+ Hl+t H KIAA0760 349 YSCP-YCSkRDFNSLAVLEIHLKTiH 373 PF00096.16.ls: domain 10 of 30, from 381 to 404: score 18.0, E = 0.031 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ++C+ +C s + +nL+ H r+ H KIAA0760 381 HTCQ-ICLDSMPTLYNLNEHVRKlH 404 PF00096.16.ls: domain 11 of 30, from 420 to 443: score 25.3, E = 0.00021 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ +C ++F + +L+ H+r++H KIAA0760 420 FHCN-YCPEMFADINSLQEHIRVsH 443 PF00096.16.fs: domain 11 of 31, from 420 to 443: score 23.3, E = 0.00015 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + C+ +C ++F + +L+ H+r++H KIAA0760 420 FHCN-YCPEMFADINSLQEHIRVsH 443 PF00096.16.ls: domain 14 of 30, from 572 to 594: score 23.9, E = 0.00053 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C+ +Fs+ +++++Hl+ H KIAA0760 572 YPCN-QCDLKFSNFESFQTHLKLH 594 PF00096.16.ls: domain 15 of 30, from 602 to 624: score 18.6, E = 0.021 *->ykCpfdCgksFsrksnLkrHlrtH<-* Cp +C++ F ++++L +Hl +H KIAA0760 602 QACP-QCKEDFDSQESLLQHLTVH 624 PF00096.16.fs: domain 16 of 31, from 632 to 655: score 24.0, E = 9.7e-05 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ C+k Fs+ ++L++Hl H KIAA0760 632 YVCE-SCDKQFSSVDDLQKHLLDmH 655 PF00096.16.ls: domain 16 of 30, from 632 to 655: score 26.0, E = 0.00012 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ C+k Fs+ ++L++Hl H KIAA0760 632 YVCE-SCDKQFSSVDDLQKHLLDmH 655 PF00096.16.ls: domain 17 of 30, from 660 to 683: score 18.6, E = 0.02 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ C+++F +k + + Hl ++H KIAA0760 660 YHCT-LCQEVFDSKVSIQVHLAVkH 683 PF00096.16.ls: domain 18 of 30, from 690 to 713: score 20.1, E = 0.0074 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C+ C+ F+ ++L+ H + +H KIAA0760 690 YRCT-ACNWDFRKEADLQVHVKHsH 713 PF00096.16.ls: domain 19 of 30, from 721 to 743: score 19.4, E = 0.012 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC Cg++Fs+ +L+ H+ tH KIAA0760 721 HKCI-FCGETFSTEVELQCHITTH 743 PF00096.16.ls: domain 21 of 30, from 826 to 849: score 19.2, E = 0.014 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +Cg +++ L++H+ ++H KIAA0760 826 YGCD-ICGAAYTMEVLLQNHRLRdH 849 PF00096.16.ls: domain 22 of 30, from 870 to 892: score 22.6, E = 0.0013 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C ++F + L+ Hl+tH KIAA0760 870 HKCN-VCSRTFFSENGLREHLQTH 892 PF00096.16.fs: domain 23 of 31, from 899 to 921: score 23.9, E = 0.0001 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cg++F + +L+ H+ tH KIAA0760 899 YMCP-ICGERFPSLLTLTEHKVTH 921 PF00096.16.ls: domain 23 of 30, from 899 to 921: score 25.9, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cg++F + +L+ H+ tH KIAA0760 899 YMCP-ICGERFPSLLTLTEHKVTH 921 PF00096.16.ls: domain 26 of 30, from 1060 to 1083: score 23.1, E = 0.00095 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +Cp +C +F + ++L++H++++H KIAA0760 1060 LRCP-ECSVKFESAEDLESHMQVdH 1083 PF00096.16.ls: domain 28 of 30, from 1138 to 1160: score 19.2, E = 0.014 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C+++F +++ L Hl H KIAA0760 1138 HECK-LCNQMFDSPAKLLCHLIEH 1160 PF00096.16.ls: domain 29 of 30, from 1169 to 1192: score 22.1, E = 0.0018 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +kCp +C ++F + L++H+ H KIAA0760 1169 FKCP-VCFTVFVQANKLQQHIFAvH 1192 PF00096.16.ls: domain 30 of 30, from 1199 to 1222: score 19.4, E = 0.012 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +C ++F + +L++H +++H KIAA0760 1199 YDCS-QCPQKFFFQTELQNHTMSqH 1222 //