hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12151394/chunk_1/iprscan-20080502-12151394.nocrc
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Query sequence: KIAA0759
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF03372.13.ls Endonuclease/Exonuclease/phosphatase fa   131.7    1.9e-36   1
PF03372.13.fs Endonuclease/Exonuclease/phosphatase fa   129.6    2.2e-36   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF03372.13.fs   1/1     248   666 ..     1   198 []   129.6  2.2e-36
PF03372.13.ls   1/1     248   666 ..     1   198 []   131.7  1.9e-36

Alignments of top-scoring domains:
PF03372.13.fs: domain 1 of 1, from 248 to 666: score 129.6, E = 2.2e-36
                   *->lkiltwNvnglra.l.s....................llellk.edp
                      ++++++N++++    +s++   + +++  +++ +  +l+++++++dp
    KIAA0759   248    FTLMSYNILAQDLmQqSselylhchpdilnwnyrfvnLMQEFQhWDP 294  

                   DvicLQEvklsp.s.ll.l.lg.gyv.ytgfgg.gggkgGvailsklplv
                   D++cLQEv+  + +++l+++l  ++++ ++  ++g++ +G+a+++k  ++
    KIAA0759   295 DILCLQEVQEDHyWeQLePsLRmMGFtCFYKRRtGCKTDGCAVCYKPTRF 344  

                   svi.gi.........................dli.rvilasgt.fvvvnt
                    +    + +  +++ +  ++++ +      +++ +   ++s  +++v+nt
    KIAA0759   345 RLLcASpveyfrpglellnrdnvglvlllqpLVPeGLGQVSVApLCVANT 394  

                   Hlpagg.rldeRlaqyaelldflsf.......ksdpvilcGDfNarpdei
                   H   +++r d++laq+a ll ++ +  + +++++ p+ilcGD+N  pd++
    KIAA0759   395 HILYNPrRGDVKLAQMAILLAEVDKvarlsdgSHCPIILCGDLNSVPDSP 444  

                   ds.llk.igkstl.....................................
                    ++++++++++ ++ +  + +++++ +++  +++ + +  +++ + ++  
    KIAA0759   445 LYnFIRdGELQYHgmpawkvsgqedfshqlyqrklqaplwpsslgitdcc 494  

                   ..................................................
                   +  ++ +++++++++ +++   + +  +   +++ +    ++ +++++++
    KIAA0759   495 qyvtschpkrserrkygrdfllrfrfcsiacqrpvglvlmegvtdtkper 544  

                   .............................elpitfppTywsyrgt.....
                   + +  ++  +++ ++ ++  +++ ++ +++l+ t  +T++    ++++ +
    KIAA0759   545 pagwaesvleedaselepafsrtvgtiqhCLHLTSVYTHFLPQRGrpevt 594  

                   sekkntgsrlDrilvsg.ll.rv.il.ille...................
                   +++ + g++ D+i+ s +++++ + ++ +l ++++ +  ++ +  +++  
    KIAA0759   595 TMPLGLGMTVDYIFFSAeSCeNGnRTdHRLYrdgtlkllgrlsllseeil 644  

                   .........vlgSDHrPVlatl<-*
                      ++ ++++  SDH ++la +   
    KIAA0759   645 waanglpnpFCSSDHLCLLASF    666  

PF03372.13.ls: domain 1 of 1, from 248 to 666: score 131.7, E = 1.9e-36
                   *->lkiltwNvnglra.l.s....................llellk.edp
                      ++++++N++++    +s++   + +++  +++ +  +l+++++++dp
    KIAA0759   248    FTLMSYNILAQDLmQqSselylhchpdilnwnyrfvnLMQEFQhWDP 294  

                   DvicLQEvklsp.s.ll.l.lg.gyv.ytgfgg.gggkgGvailsklplv
                   D++cLQEv+  + +++l+++l  ++++ ++  ++g++ +G+a+++k  ++
    KIAA0759   295 DILCLQEVQEDHyWeQLePsLRmMGFtCFYKRRtGCKTDGCAVCYKPTRF 344  

                   svi.gi.........................dli.rvilasgt.fvvvnt
                    +    + +  +++ +  ++++ +      +++ +   ++s  +++v+nt
    KIAA0759   345 RLLcASpveyfrpglellnrdnvglvlllqpLVPeGLGQVSVApLCVANT 394  

                   Hlpagg.rldeRlaqyaelldflsf.......ksdpvilcGDfNarpdei
                   H   +++r d++laq+a ll ++ +  + +++++ p+ilcGD+N  pd++
    KIAA0759   395 HILYNPrRGDVKLAQMAILLAEVDKvarlsdgSHCPIILCGDLNSVPDSP 444  

                   ds.llk.igkstl.....................................
                    ++++++++++ ++ +  + +++++ +++  +++ + +  +++ + ++  
    KIAA0759   445 LYnFIRdGELQYHgmpawkvsgqedfshqlyqrklqaplwpsslgitdcc 494  

                   ..................................................
                   +  ++ +++++++++ +++   + +  +   +++ +    ++ +++++++
    KIAA0759   495 qyvtschpkrserrkygrdfllrfrfcsiacqrpvglvlmegvtdtkper 544  

                   .............................elpitfppTywsyrgt.....
                   + +  ++  +++ ++ ++  +++ ++ +++l+ t  +T++    ++++ +
    KIAA0759   545 pagwaesvleedaselepafsrtvgtiqhCLHLTSVYTHFLPQRGrpevt 594  

                   sekkntgsrlDrilvsg.ll.rv.il.ille...................
                   +++ + g++ D+i+ s +++++ + ++ +l ++++ +  ++ +  +++  
    KIAA0759   595 TMPLGLGMTVDYIFFSAeSCeNGnRTdHRLYrdgtlkllgrlsllseeil 644  

                   .........vlgSDHrPVlatl<-*
                      ++ ++++  SDH ++la +   
    KIAA0759   645 waanglpnpFCSSDHLCLLASF    666  

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