hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11404713/chunk_1/iprscan-20080502-11404713.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0739 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00955.11.ls HCO3- transporter family 1277.8 0 1 PF00955.11.fs HCO3- transporter family 1276.1 0 1 PF07565.4.ls Band 3 cytoplasmic domain 604.0 1.3e-178 1 PF07565.4.fs Band 3 cytoplasmic domain 602.2 4.4e-178 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07565.4.fs 1/1 231 490 .. 1 286 [] 602.2 4.4e-178 PF07565.4.ls 1/1 231 490 .. 1 286 [] 604.0 1.3e-178 PF00955.11.fs 1/1 530 1044 .. 1 519 [] 1276.1 0 PF00955.11.ls 1/1 530 1044 .. 1 519 [] 1277.8 0 Alignments of top-scoring domains: PF07565.4.fs: domain 1 of 1, from 231 to 490: score 602.2, E = 4.4e-178 *->dveeggerWGKPHVAtLSfhSLlELRrciakGavLLDLqatSLpgva dve+ggerW+KP+VAtLS+hSL+ELR+c+++G+vLLD++a+S+++++ KIAA0739 231 DVEDGGERWSKPYVATLSLHSLFELRSCLINGTVLLDMHANSIEEIS 277 hlVvdqlilsgqlraedReeVLRALLlKHsHqsekkdlnGaGGekGGflp +l++dq++ls++l++++R++V++ALL+KH+Hq+ekk++n ++p KIAA0739 278 DLILDQQELSSDLNDSMRVKVREALLKKHHHQNEKKRNN--------LIP 319 rarsqasiGkklshhhaqsaskdeevpegpvtsgtpllpqeserdlemqt ++rs+a++Gkk+s+ +++++++++ +++pq+++ +t KIAA0739 320 IVRSFAEVGKKQSD-----PHLMDKHGQ-------TVSPQSVP-----TT 352 lhevgqsGvnCdissrdksKlelkllkKiPedaEAsnVLVGevDFLErPi + ev++ GvnC++s++d sK++l+++kKiP++aEAsnVLVGevD+L+rPi KIAA0739 353 NLEVKN-GVNCEHSPVDLSKVDLHFMKKIPTGAEASNVLVGEVDILDRPI 401 vAFVRLqeAveLegvlEVPVPvRFLFvLLGPsgkgqdYHEiGRaiATLMs vAFVRL++Av+L+g++EVP+P+RFLF+LLGP+gkgq+YHEiGR++AT+M+ KIAA0739 402 VAFVRLSPAVLLSGLTEVPIPTRFLFILLGPVGKGQQYHEIGRSMATIMT 451 DevFhddAYlAkeReDLLagIdeFLDcsiVLPPgEvdpe<-* De+Fhd+AY+AkeR+DLLagIdeFLD+++VLPPgE+dp+ KIAA0739 452 DEIFHDVAYKAKERDDLLAGIDEFLDQVTVLPPGEWDPS 490 PF07565.4.ls: domain 1 of 1, from 231 to 490: score 604.0, E = 1.3e-178 *->dveeggerWGKPHVAtLSfhSLlELRrciakGavLLDLqatSLpgva dve+ggerW+KP+VAtLS+hSL+ELR+c+++G+vLLD++a+S+++++ KIAA0739 231 DVEDGGERWSKPYVATLSLHSLFELRSCLINGTVLLDMHANSIEEIS 277 hlVvdqlilsgqlraedReeVLRALLlKHsHqsekkdlnGaGGekGGflp +l++dq++ls++l++++R++V++ALL+KH+Hq+ekk++n ++p KIAA0739 278 DLILDQQELSSDLNDSMRVKVREALLKKHHHQNEKKRNN--------LIP 319 rarsqasiGkklshhhaqsaskdeevpegpvtsgtpllpqeserdlemqt ++rs+a++Gkk+s+ +++++++++ +++pq+++ +t KIAA0739 320 IVRSFAEVGKKQSD-----PHLMDKHGQ-------TVSPQSVP-----TT 352 lhevgqsGvnCdissrdksKlelkllkKiPedaEAsnVLVGevDFLErPi + ev++ GvnC++s++d sK++l+++kKiP++aEAsnVLVGevD+L+rPi KIAA0739 353 NLEVKN-GVNCEHSPVDLSKVDLHFMKKIPTGAEASNVLVGEVDILDRPI 401 vAFVRLqeAveLegvlEVPVPvRFLFvLLGPsgkgqdYHEiGRaiATLMs vAFVRL++Av+L+g++EVP+P+RFLF+LLGP+gkgq+YHEiGR++AT+M+ KIAA0739 402 VAFVRLSPAVLLSGLTEVPIPTRFLFILLGPVGKGQQYHEIGRSMATIMT 451 DevFhddAYlAkeReDLLagIdeFLDcsiVLPPgEvdpe<-* De+Fhd+AY+AkeR+DLLagIdeFLD+++VLPPgE+dp+ KIAA0739 452 DEIFHDVAYKAKERDDLLAGIDEFLDQVTVLPPGEWDPS 490 PF00955.11.fs: domain 1 of 1, from 530 to 1044: score 1276.1, E = 0 *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL +L+RTGRlFGGL++DiKR++PwY+SD+rDAL++QcLA+++F+Y+A++ KIAA0739 530 ELQRTGRLFGGLVLDIKRKAPWYWSDYRDALSLQCLASFLFLYCACM 576 SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP SP+ITFGGLLGe+Teg+++++Esl++++++Gi++sL+agQ L+IlGsTGP KIAA0739 577 SPVITFGGLLGEATEGRISAIESLFGASMTGIAYSLFAGQALTILGSTGP 626 lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT +LVFE++lFkFCkd+ l+YL++R IGlW+a++++vlVAt++S+LV+yiT KIAA0739 627 VLVFEKILFKFCKDYALSYLSLRACIGLWTAFLCIVLVATDASSLVCYIT 676 RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp RFT+E+Fa+LI++IFIYE+++KLi++++++P++++++ld+l++y+C+c+ KIAA0739 677 RFTEEAFASLICIIFIYEAIEKLIHLAETYPIHMHSQLDHLSLYYCRCTL 726 Petvnseslaeskkltkttteidwslltksecekyggsldgtscgth.pp Pe++n+++l+++k++++ t+e+ w++lt+sec++++g+++g++cg+h+p+ KIAA0739 727 PENPNNHTLQYWKDHNIVTAEVHWANLTVSECQEMHGEFMGSACGHHgPY 776 qPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIgDFgVpIaIli +P+++++S+iL+f+TF+++++LK+FK+Sr+FP++vR++++DF+V+++I++ KIAA0739 777 TPDVLFWSCILFFTTFILSSTLKTFKTSRYFPTRVRSMVSDFAVFLTIFT 826 MvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkkggnPwWmmfa Mv +D+lig v+++KL+VPs++kPT+++ RGW+InP+ g+nPwW+++a KIAA0739 827 MVIIDFLIG-VPSPKLQVPSVFKPTRDD-RGWIINPI---GPNPWWTVIA 871 AaiPALLvtILIFMeqQITalIVnkKErkLkKGsGfHLDLLlvavlggvC A+iPALL+tILIFM+qQITa+I+n+KE+kLkKG+G+HLDLL+va+++gvC KIAA0739 872 AIIPALLCTILIFMDQQITAVIINRKEHKLKKGCGYHLDLLMVAIMLGVC 921 slfGLPWlvAATVrSitHvnsLtveSkcsAPGekPqilgVrEQRVTGllV s++GLPW+vAATV+SitHvnsL++eS+csAPGe+P++lg+rEQRVTGl++ KIAA0739 922 SIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLGIREQRVTGLMI 971 flLvGlSVlmapiLkfIPMpVLFGvFLYMGVaSLsGIQlfdRllLllMPa f+L+G+SV+m++iLkfIPMpVL+GvFLYMGV+SL+GIQ+fdRl+L++MPa KIAA0739 972 FVLMGCSVFMTAILKFIPMPVLYGVFLYMGVSSLQGIQFFDRLKLFGMPA 1021 KyqPDviYvRhVptwRvHLFTli<-* K+qPD+iY+RhVp+++vHLFTli KIAA0739 1022 KHQPDFIYLRHVPLRKVHLFTLI 1044 PF00955.11.ls: domain 1 of 1, from 530 to 1044: score 1277.8, E = 0 *->pLeRTGRlFGGLIrDiKRryPwYlSDfrDALnpQcLAAiiFiYFAaL +L+RTGRlFGGL++DiKR++PwY+SD+rDAL++QcLA+++F+Y+A++ KIAA0739 530 ELQRTGRLFGGLVLDIKRKAPWYWSDYRDALSLQCLASFLFLYCACM 576 SPAITFGGLLGekTeglmGvsEsllStAvqGivFsLlagQPLlIlGsTGP SP+ITFGGLLGe+Teg+++++Esl++++++Gi++sL+agQ L+IlGsTGP KIAA0739 577 SPVITFGGLLGEATEGRISAIESLFGASMTGIAYSLFAGQALTILGSTGP 626 lLVFEealFkFCkdngldYLtfRvWIGlWlavivLvlVAtEgSfLVryiT +LVFE++lFkFCkd+ l+YL++R IGlW+a++++vlVAt++S+LV+yiT KIAA0739 627 VLVFEKILFKFCKDYALSYLSLRACIGLWTAFLCIVLVATDASSLVCYIT 676 RFTqEiFaaLISlIFIYEtfkKLikifkahPlnssykldfltnysCvcvp RFT+E+Fa+LI++IFIYE+++KLi++++++P++++++ld+l++y+C+c+ KIAA0739 677 RFTEEAFASLICIIFIYEAIEKLIHLAETYPIHMHSQLDHLSLYYCRCTL 726 Petvnseslaeskkltkttteidwslltksecekyggsldgtscgth.pp Pe++n+++l+++k++++ t+e+ w++lt+sec++++g+++g++cg+h+p+ KIAA0739 727 PENPNNHTLQYWKDHNIVTAEVHWANLTVSECQEMHGEFMGSACGHHgPY 776 qPntaLlSliLmfGTFfiAyfLKkFKNSrFFPgkvRrvIgDFgVpIaIli +P+++++S+iL+f+TF+++++LK+FK+Sr+FP++vR++++DF+V+++I++ KIAA0739 777 TPDVLFWSCILFFTTFILSSTLKTFKTSRYFPTRVRSMVSDFAVFLTIFT 826 MvlvDyligdvyTqKLsVPsglkPTnptkRGWfInPlgkkggnPwWmmfa Mv +D+lig v+++KL+VPs++kPT+++ RGW+InP+ g+nPwW+++a KIAA0739 827 MVIIDFLIG-VPSPKLQVPSVFKPTRDD-RGWIINPI---GPNPWWTVIA 871 AaiPALLvtILIFMeqQITalIVnkKErkLkKGsGfHLDLLlvavlggvC A+iPALL+tILIFM+qQITa+I+n+KE+kLkKG+G+HLDLL+va+++gvC KIAA0739 872 AIIPALLCTILIFMDQQITAVIINRKEHKLKKGCGYHLDLLMVAIMLGVC 921 slfGLPWlvAATVrSitHvnsLtveSkcsAPGekPqilgVrEQRVTGllV s++GLPW+vAATV+SitHvnsL++eS+csAPGe+P++lg+rEQRVTGl++ KIAA0739 922 SIMGLPWFVAATVLSITHVNSLKLESECSAPGEQPKFLGIREQRVTGLMI 971 flLvGlSVlmapiLkfIPMpVLFGvFLYMGVaSLsGIQlfdRllLllMPa f+L+G+SV+m++iLkfIPMpVL+GvFLYMGV+SL+GIQ+fdRl+L++MPa KIAA0739 972 FVLMGCSVFMTAILKFIPMPVLYGVFLYMGVSSLQGIQFFDRLKLFGMPA 1021 KyqPDviYvRhVptwRvHLFTli<-* K+qPD+iY+RhVp+++vHLFTli KIAA0739 1022 KHQPDFIYLRHVPLRKVHLFTLI 1044 //