hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11354644/chunk_1/iprscan-20080502-11354644.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0736
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
TIGR01299  synapt_SV2: synaptic vesicle protein SV2    1694.1          0   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
TIGR01299    1/1       7   748 .]     1   742 []  1694.1        0

Alignments of top-scoring domains:
TIGR01299: domain 1 of 1, from 7 to 748: score 1694.1, E = 0
                   *->ledgfkdraallkGakdiakevkkhaakkvnkgldraqdeytrrsys
                      +e+gf+draa+++Gakdiakevkkhaakkv+kgldr+qdey+rrsys
    KIAA0736     7    MEEGFRDRAAFIRGAKDIAKEVKKHAAKKVVKGLDRVQDEYSRRSYS 53   

                   rfededddddfppPgdgyyrGegnddeeeGggssdateGhdeddeiyeGe
                   rfe+edddddfp+P+dgyyrGeg +deeeGg+ssdateGhdeddeiyeGe
    KIAA0736    54 RFEEEDDDDDFPAPSDGYYRGEGTQDEEEGGASSDATEGHDEDDEIYEGE 103  

                   yqGiPraengGkgervadGaPlgGvrgglkdgeGPPGGegeaerrkdeee
                   yqGiPrae+gGkger+adGaPl+Gvrggl+dgeGPPGG+gea+rrk++ee
    KIAA0736   104 YQGIPRAESGGKGERMADGAPLAGVRGGLSDGEGPPGGRGEAQRRKEREE 153  

                   laqqyelilrecGhGrfqWalffvlGlalladGvevfvvGfvlPsaekdl
                   laqqye ilrecGhGrfqW+l+fvlGlal+adGvevfvvGfvlPsaekd+
    KIAA0736   154 LAQQYEAILRECGHGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDM 203  

                   clpdsgkGwlGlivylGllvGaflWGGladklGrkqclliclsvngffaf
                   cl+ds+kG+lGlivylG++vGaflWGGlad+lGr+qclli+lsvn++faf
    KIAA0736   204 CLSDSNKGMLGLIVYLGMMVGAFLWGGLADRLGRRQCLLISLSVNSVFAF 253  

                   lssfvqGyGffllcrllsGfGiGGaiPtvfsyfaeflarekrGehlsWlc
                   +ssfvqGyG+fl+crllsG+GiGG+iP+vfsyf+efla+ekrGehlsWlc
    KIAA0736   254 FSSFVQGYGTFLFCRLLSGVGIGGSIPIVFSYFSEFLAQEKRGEHLSWLC 303  

                   lfWliGGvyaaalaWaiiPhyGWsfslGsayqfhsWrvfvlvcalPcvfa
                   +fW+iGGvyaaa+aWaiiPhyGWsf++GsayqfhsWrvfvlvca+P+vfa
    KIAA0736   304 MFWMIGGVYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVLVCAFPSVFA 353  

                   vgaltfqPesPrfllenGkhdeaWlvlklvhdtnlrakGhPekvftvnhi
                   +galt+qPesPrf+lenGkhdeaW+vlk+vhdtn+rakGhPe+vf+v+hi
    KIAA0736   354 IGALTTQPESPRFFLENGKHDEAWMVLKQVHDTNMRAKGHPERVFSVTHI 403  

                   ktphqedelieiesdtGtWyrrwgvraltlgggvWgnflrcfnppyrent
                   kt+hqedeliei+sdtGtWy+rwgvral+lgg+vWgnfl+cf p+yr++t
    KIAA0736   404 KTIHQEDELIEIQSDTGTWYQRWGVRALSLGGQVWGNFLSCFGPEYRRIT 453  

                   lkltgvWftlsfgyyGltvWfPdvikhlqaddyalltknfpgdkyenftf
                   l+++gvWft+sf+yyGltvWfPd+i+hlqa+dya +tk+fpg+++e++tf
    KIAA0736   454 LMMMGVWFTMSFSYYGLTVWFPDMIRHLQAVDYASRTKVFPGERVEHVTF 503  

                   nftlenqvhtGgeydngkflGlklksvtfedslfeecyfddvtssntffk
                   nftlenq+h+Gg+y+n+kf+Gl+lksv+fedslfeecyf+dvtssntff+
    KIAA0736   504 NFTLENQIHRGGQYFNDKFIGLRLKSVSFEDSLFEECYFEDVTSSNTFFR 553  

                   nctfidtlfyntdlfpykfvdselvnctflhnkeGcpldfdGdgygaywv
                   nctfi+t+fyntdlf+ykfv+s+l+n+tflhnkeGcpld++G+g+gay+v
    KIAA0736   554 NCTFINTVFYNTDLFEYKFVNSRLINSTFLHNKEGCPLDVTGTGEGAYMV 603  

                   yfvnflGtlavlPGnivsallldkiGrltllgGssvlsgvscfflwfGns
                   yfv+flGtlavlPGnivsall+dkiGrl++l+Gssv+s+vscffl+fGns
    KIAA0736   604 YFVSFLGTLAVLPGNIVSALLMDKIGRLRMLAGSSVMSCVSCFFLSFGNS 653  

                   esaligllclfgGltiaaWnaldvltvelyPtdkratgfGflnalcklaa
                   esa+i+llclfgG++ia+WnaldvltvelyP+dkr+t+fGflnalcklaa
    KIAA0736   654 ESAMIALLCLFGGVSIASWNALDVLTVELYPSDKRTTAFGFLNALCKLAA 703  

                   vlGnlifgslvgitkaaPillasaalalGgllglklPdtrgqvlq<-*
                   vlG++if+s+vgitkaaPil+asaalalG++l+lklP+trgqvlq   
    KIAA0736   704 VLGISIFTSFVGITKAAPILFASAALALGSSLALKLPETRGQVLQ    748  

//