hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11272450/chunk_1/iprscan-20080502-11272450.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0731
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00684                                                 171.2    1.1e-46   3
SM00715                                                 149.4    3.7e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00715    1/1     401   477 ..     1    92 []   149.4  3.7e-40
SM00684    1/3     884   925 ..     1    42 []    82.0  7.3e-20
SM00684    2/3     926   964 ..     1    42 []    79.6  3.8e-19
SM00684    3/3     965  1000 ..     1    42 []     9.6     0.86

Alignments of top-scoring domains:
SM00715: domain 1 of 1, from 401 to 477: score 149.4, E = 3.7e-40
                   *->eelkqkikkQvEYYFSdeNLprDkFLrkkmdknkdGyVPistiasFk
                      e+lk++ik+Q+EYYFS +NL+rD+FLr+kmd   dG++Pi++iasF+
    KIAA0731   401    ELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA--DGFLPITLIASFH 445  

                   RvksLttDGdDIpyevnlIveALreSyeaellevsedmglkvRRt<-*
                   Rv++LttD       ++lI +AL++S   +++e++++   kvRR+   
    KIAA0731   446 RVQALTTD-------ISLIFAALKDS---KVVEIVDE---KVRRR    477  

SM00684: domain 1 of 3, from 884 to 925: score 82.0, E = 7.3e-20
                   *->nFnqnmYeeFrqlaLedrkklgyGdryelecLyRFwSygLrk<-*
                       F+q +Y+++r ++L +rk+lg+G+++e+++L+RFwS++Lr+   
    KIAA0731   884    GFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRD    925  

SM00684: domain 2 of 3, from 926 to 964: score 79.6, E = 3.8e-19
                   *->nFnqnmYeeFrqlaLedrkklgyGdryelecLyRFwSygLrk<-*
                      +Fn++mYeeF+qlaLed+k+++   ry+lecL+R++SygL+k   
    KIAA0731   926    HFNKKMYEEFKQLALEDAKEGY---RYGLECLFRYYSYGLEK    964  

SM00684: domain 3 of 3, from 965 to 1000: score 9.6, E = 0.86
                   *->nFnqnmYeeFrqlaLedrkklgyGdryelecLyRFwSygLrk<-*
                      +F  +  ++F   + +d +       + l++L++Fw++       
    KIAA0731   965    KFRLDIFKDFQEETVKDYE------AGQLYGLEKFWAFLKYS    1000 

//