hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11221943/chunk_1/iprscan-20080502-11221943.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0728 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00150 728.7 1.5e-214 11 SM00243 193.0 2.7e-53 1 SM00054 50.2 2.6e-10 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00150 1/11 1 95 [. 1 104 [] 38.7 8.1e-07 SM00150 2/11 102 208 .. 1 104 [] 45.7 6.3e-09 SM00150 3/11 215 317 .. 1 104 [] 58.7 7.4e-13 SM00150 4/11 324 427 .. 1 104 [] 54.4 1.5e-11 SM00150 5/11 434 536 .. 1 104 [] 109.3 4.4e-28 SM00150 6/11 543 645 .. 1 104 [] 79.2 5.2e-19 SM00150 7/11 652 754 .. 1 104 [] 66.9 2.6e-15 SM00150 8/11 761 864 .. 1 104 [] 71.6 9.9e-17 SM00150 9/11 871 972 .. 1 104 [] 92.4 5.5e-23 SM00150 10/11 979 1081 .. 1 104 [] 66.7 2.9e-15 SM00150 11/11 1091 1221 .. 1 104 [] 45.3 8.1e-09 SM00054 1/2 1255 1283 .. 1 29 [] 25.9 0.0055 SM00054 2/2 1291 1319 .. 1 29 [] 24.3 0.017 SM00243 1/1 1330 1408 .. 1 76 [] 193.0 2.7e-53 Alignments of top-scoring domains: SM00150: domain 1 of 11, from 1 to 95: score 38.7, E = 8.1e-07 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +el Wl+e++ + s+ + + + e++++++++H +l++ KIAA0728 1 -------EELWPWLTETQSIISQLPAP-ALEYETLRQQQEEHRQLRE 39 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae +a+h++ +d++n++g qL+e ++ + +I+e+ + ++ + +++e ++ KIAA0728 40 LIAEHKPHIDKMNKTGPQLLEL-SPGEGFSIQEKYVAADTLYSQIKEDVK 88 eRrqkLe<-* +R +L+ KIAA0728 89 KRAVALD 95 SM00150: domain 2 of 11, from 102 to 208: score 45.7, E = 6.3e-09 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea qF++++d++++ le + l + + s +e +++++ + + KIAA0728 102 TQFHDKIDQILESLERIVERLRQPPSI-SAEVEKIKEQISENKNVSV 147 elaaheervdalnelgeqLiee....sghpdaeeIeerleelnerWeeLl +++ ++ +++l++ ge++i++++++ ++ a++++++l+++ We+++ KIAA0728 148 DMEKLQPLYETLKQRGEEMIARsggtDKDISAKAVQDKLDQMVFIWENIH 197 elaeeRrqkLe<-* l+eeR++kL KIAA0728 198 TLVEEREAKLL 208 SM00150: domain 3 of 11, from 215 to 317: score 58.7, E = 7.4e-13 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale ++F d l+ ++++++ + ed+g D++ v+++++ ++++ KIAA0728 215 EKFWCDHMSLIVTIKDTQdFIRDLEDPG--IDPSVVKQQQEAAETIR 259 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela +e++ +e++d +++lg +Li+++g+pd++ +++ ++eln++W++L +++ KIAA0728 260 EEIDGLQEELDIVINLGSELIAACGEPDKPIVKKSIDELNSAWDSLNKAW 309 eeRrqkLe<-* ++R kLe KIAA0728 310 KDRIDKLE 317 SM00150: domain 4 of 11, from 324 to 427: score 54.4, E = 1.5e-11 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale q+++ ++ + +W++ + ++l+s ++g Dle+v+++++++++++ KIAA0728 324 VQYQDGLQAVFDWVDIAGgKLASMSPIG--TDLETVKQQIEELKQFK 368 aelaaheervdalnelgeqLiee.sghpdaeeIeerleelnerWeeLlel e +++ +++ ln+++e L+++ ++ d+ ++++ l el+ W++L+e+ KIAA0728 369 SEAYQQQIEMERLNHQAELLLKKvTEESDKHTVQDPLMELKLIWDSLEER 418 aeeRrqkLe<-* +R++kLe KIAA0728 419 IINRQHKLE 427 SM00150: domain 5 of 11, from 434 to 536: score 109.3, E = 4.4e-28 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale qF++++del+aWl+ +e+ l +++++g +D+ ++e l kH l+ KIAA0728 434 GQFQHALDELLAWLTHTEgLLSEQKPVG--GDPKAIEIELAKHHVLQ 478 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela +++ ah+ +v+a+n++g++Lie+s +++a +++++le ln+rW+++le++ KIAA0728 479 NDVLAHQSTVEAVNKAGNDLIESSAGEEASNLQNKLEVLNQRWQNVLEKT 528 eeRrqkLe<-* e+R+q+L+ KIAA0728 529 EQRKQQLD 536 SM00150: domain 6 of 11, from 543 to 645: score 79.2, E = 5.2e-19 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale F+ ++++l +Wl+++e+ ll+s++lg + +e+++++l H + KIAA0728 543 KGFHGEIEDLQQWLTDTErHLLASKPLG--GLPETAKEQLNVHMEVC 587 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela a +a+ee++++l + g+q+++++ + +I + +++l+e+We+++ ++ KIAA0728 588 AAFEAKEETYKSLMQKGQQMLARCPKSAETNIDQDINNLKEKWESVETKL 637 eeRrqkLe<-* eR+ kLe KIAA0728 638 NERKTKLE 645 SM00150: domain 7 of 11, from 652 to 754: score 66.9, E = 2.6e-15 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +F+ ++++++Wl+ +eq l+ + s l++v ++++H+ + + KIAA0728 652 MEFHNSLQDFINWLTQAEQTLNVASRP-SLILDTVLFQIDEHKVFAN 697 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae e++ h+e++ +l+++g L+ s+ d I++ l +++rWe++ +++ KIAA0728 698 EVNSHREQIIELDKTGTHLKYFSQKQDVVLIKNLLISVQSRWEKVVQRLV 747 eRrqkLe<-* eR++ L+ KIAA0728 748 ERGRSLD 754 SM00150: domain 8 of 11, from 761 to 864: score 71.6, E = 9.9e-17 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale qF+++ l++Wlee e+ l s +++ +D++ ++ +l +H++++ KIAA0728 761 KQFHEAWSKLMEWLEESEkSLDSELEIA--NDPDKIKTQLAQHKEFQ 805 aelaaheervdalnelgeqLiee.sghpdaeeIeerleelnerWeeLlel + l a++ +d+ n++g+ L+e++s +d ++ + l el+++W+ ++ + KIAA0728 806 KSLGAKHSVYDTTNRTGRSLKEKtSLADDNLKLDDMLSELRDKWDTICGK 855 aeeRrqkLe<-* + eR++kLe KIAA0728 856 SVERQNKLE 864 SM00150: domain 9 of 11, from 871 to 972: score 92.4, E = 5.5e-23 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale qF ++++ l++Wl e+ql++++++ +D++ v++l++ H+a++ KIAA0728 871 GQFTDALQALIDWLYRVEpQLAEDQPVH--GDIDLVMNLIDNHKAFQ 915 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela +el + +v+al++ +++Lie + +d+ ++ +++el +rWe +++l+ KIAA0728 916 KELGKRTSSVQALKRSARELIEG-SRDDSSWVKVQMQELSTRWETVCALS 964 eeRrqkLe<-* ++ +Le KIAA0728 965 ISKQTRLE 972 SM00150: domain 10 of 11, from 979 to 1081: score 66.7, E = 2.9e-15 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale ++F++ + l++Wl e+e++l + l+ +D+++++ l+++H++++ KIAA0728 979 EEFHSVVHALLEWLAEAEqTLRFHGVLP--DDEDALRTLIDQHKEFM 1023 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela + l+++++++++ + +g+ ++ ++++ +I+ +++ +++r+ee+l++a KIAA0728 1024 KKLEEKRAELNKATTMGDTVLAICHPDSITTIKHWITIIRARFEEVLAWA 1073 eeRrqkLe<-* ++ +q+L KIAA0728 1074 KQHQQRLA 1081 SM00150: domain 11 of 11, from 1091 to 1221: score 45.3, E = 8.1e-09 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q++l+++ ++W e + + e ++ + +e+v+al+ +Hq++++ KIAA0728 1091 QELLEALLAWLQWAETTLTDKDKEVIP--QEIEEVKALIAEHQTFME 1135 elaaheervdalnelgeqLiee..sghpdaeeIeerl............. e++ +++ vd+++++ ++ ++++s + + + + + ++++ + ++ + KIAA0728 1136 EMTRKQPDVDKVTKTYKRRAADpsSLQSHIPVLDKGRagrkrfpasslyp 1185 ..............eelnerWeeLlelaeeRrqkLe<-* ++++++ ++++++ + l ++W+++ la eRr+kL+ KIAA0728 1186 sgsqtqietknprvNLLVSKWQQVWLLALERRRKLN 1221 SM00054: domain 1 of 2, from 1255 to 1283: score 25.9, E = 0.0055 *->elkeaFrefDkDgdGkIdfeEfkallksl<-* +++ Fr +DkD dGkI+ +Ef++++ s KIAA0728 1255 RVMDFFRRIDKDQDGKITRQEFIDGILSS 1283 SM00054: domain 2 of 2, from 1291 to 1319: score 24.3, E = 0.017 *->elkeaFrefDkDgdGkIdfeEfkallksl<-* e+ ++ ++fD+DgdG+Id+ Ef+a+l+ KIAA0728 1291 EMSAVADIFDRDGDGYIDYYEFVAALHPN 1319 SM00243: domain 1 of 1, from 1330 to 1408: score 193.0, E = 2.7e-53 *->dkiddeVkrivetPPCkCptkFqvekiSegkYR.....qfGDsqiLr dki+deV+r+v++ CkC+++Fqve+i+++kYR ++qfGDsq+Lr KIAA0728 1330 DKIEDEVTRQVAK--CKCAKRFQVEQIGDNKYRfflgnQFGDSQQLR 1374 lVRiLRStVMVRVGGGWetLdeyLqKhDPCRakg<-* lVRiLRStVMVRVGGGW++Lde+L+K+DPCRakg KIAA0728 1375 LVRILRSTVMVRVGGGWMALDEFLVKNDPCRAKG 1408 //