hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11221943/chunk_1/iprscan-20080502-11221943.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0728 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00435.11.fs Spectrin repeat 402.8 2.6e-119 12 PF00435.11.ls Spectrin repeat 382.4 6.2e-112 11 PF02187.8.fs Growth-Arrest-Specific Protein 2 Domain 170.8 1.6e-51 1 PF02187.8.ls Growth-Arrest-Specific Protein 2 Domain 172.8 8e-49 1 PF00036.22.ls EF hand 57.7 3.6e-14 2 PF00036.22.fs EF hand 53.7 1.4e-13 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00435.11.ls 1/11 1 96 [. 1 111 [] 6.7 0.011 PF00435.11.ls 2/11 99 209 .. 1 111 [] 26.1 0.00011 PF00435.11.fs 2/12 99 209 .. 1 111 [] 24.2 1.1e-06 PF00435.11.ls 3/11 212 318 .. 1 111 [] 36.3 9.7e-08 PF00435.11.fs 3/12 239 318 .. 27 111 .] 49.2 4.1e-14 PF00435.11.fs 4/12 321 428 .. 1 111 [] 22.6 3.3e-06 PF00435.11.ls 4/11 321 428 .. 1 111 [] 24.5 0.00034 PF00435.11.fs 5/12 431 537 .. 1 111 [] 74.8 9.7e-22 PF00435.11.ls 5/11 431 537 .. 1 111 [] 76.8 6.5e-20 PF00435.11.ls 6/11 540 646 .. 1 111 [] 45.8 1.3e-10 PF00435.11.fs 6/12 540 646 .. 1 111 [] 43.9 1.5e-12 PF00435.11.fs 7/12 649 755 .. 1 111 [] 43.0 2.9e-12 PF00435.11.ls 7/11 649 755 .. 1 111 [] 44.9 2.5e-10 PF00435.11.fs 8/12 758 865 .. 1 111 [] 37.1 1.6e-10 PF00435.11.ls 8/11 758 865 .. 1 111 [] 39.0 1.5e-08 PF00435.11.ls 9/11 866 973 .. 1 111 [] 41.3 3e-09 PF00435.11.fs 9/12 872 973 .. 5 111 .] 41.7 7.1e-12 PF00435.11.fs 10/12 976 1082 .. 1 111 [] 36.0 3.5e-10 PF00435.11.ls 10/11 976 1082 .. 1 111 [] 37.9 3.2e-08 PF00435.11.ls 11/11 1085 1222 .. 1 111 [] 2.9 0.023 PF00036.22.fs 1/2 1255 1283 .. 1 29 [] 27.5 1.9e-06 PF00036.22.ls 1/2 1255 1283 .. 1 29 [] 29.5 1.1e-05 PF00036.22.ls 2/2 1291 1319 .. 1 29 [] 28.2 2.8e-05 PF00036.22.fs 2/2 1291 1319 .. 1 29 [] 26.2 4.4e-06 PF02187.8.ls 1/1 1330 1408 .. 1 75 [] 172.8 8e-49 PF02187.8.fs 1/1 1330 1408 .. 1 75 [] 170.8 1.6e-51 Alignments of top-scoring domains: PF00435.11.ls: domain 1 of 11, from 1 to 96: score 6.7, E = 0.011 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk ++l W++e+ ++s+ ++ +e++++ ++ H+ KIAA0728 1 ----------EELWPWLTETQSIISQLPAPALEYETLRQQQE--EHR 35 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq +l++ +a h++++++ n +++ +L ++ ++ + iqe+ + ++++ q KIAA0728 36 QLRELIAEHKPHIDKMN--KTGPQL-LELSPGEGFSIQEKYVAADTLYSQ 82 LlelaaeRkqkLee<-* ++e ++ R +L e KIAA0728 83 IKEDVKKRAVALDE 96 PF00435.11.ls: domain 2 of 11, from 99 to 209: score 26.1, E = 0.00011 *->lllqqFqrdaddlesWieek.ealLssedyegkdleevqaLlkql.k + qF+ ++d++++ +e + e+l + +ev+ +++q++ KIAA0728 99 SQSTQFHDKIDQILESLERIvERLR---QP-PSISAEVEKIKEQIsE 141 HkaleaelaahqdrvealninelaekLiideg.....hyaseeiqerlee k +++ +q+ e+l + +e++ i+++++++++ +++++q++l++ KIAA0728 142 NKNVSVDMEKLQPLYETLK--QRGEEM-IARSggtdkDISAKAVQDKLDQ 188 LnerWeqLlelaaeRkqkLee<-* We++++l++eR++kL++ KIAA0728 189 MVFIWENIHTLVEEREAKLLD 209 PF00435.11.fs: domain 2 of 12, from 99 to 209: score 24.2, E = 1.1e-06 *->lllqqFqrdaddlesWieek.ealLssedyegkdleevqaLlkql.k + qF+ ++d++++ +e + e+l + +ev+ +++q++ KIAA0728 99 SQSTQFHDKIDQILESLERIvERLR---QP-PSISAEVEKIKEQIsE 141 HkaleaelaahqdrvealninelaekLiideg.....hyaseeiqerlee k +++ +q+ e+l + +e++ i+++++++++ +++++q++l++ KIAA0728 142 NKNVSVDMEKLQPLYETLK--QRGEEM-IARSggtdkDISAKAVQDKLDQ 188 LnerWeqLlelaaeRkqkLee<-* We++++l++eR++kL++ KIAA0728 189 MVFIWENIHTLVEEREAKLLD 209 PF00435.11.ls: domain 3 of 11, from 212 to 318: score 36.3, E = 9.7e-08 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH +l+++F d l i ++ +++ ed g d++ v++ ++ KIAA0728 212 ELAEKFWCDHMSLIVTIKDTQDFIrDLEDP-GIDPSVVKQQQE--AA 255 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe +++++e++++q+ ++ + l+ +Li++ g ++ + +++ ++eLn++W+ KIAA0728 256 ETIREEIDGLQEELDIVI--NLGSELIAACGEPDKPIVKKSIDELNSAWD 303 qLlelaaeRkqkLee<-* +L +++++R kLee KIAA0728 304 SLNKAWKDRIDKLEE 318 PF00435.11.fs: domain 3 of 12, from 239 to 318: score 49.2, E = 4.1e-14 *->edyegkdleevqaLlkqlkHkaleaelaahqdrvealninelaekLi ed g d++ v++ ++ +++++e++++q+ ++ + l+ +Li KIAA0728 239 EDP-GIDPSVVKQQQE--AAETIREEIDGLQEELDIVI--NLGSELI 280 ideghyaseeiqerleeLnerWeqLlelaaeRkqkLee<-* ++ g ++ + +++ ++eLn++W++L +++++R kLee KIAA0728 281 AACGEPDKPIVKKSIDELNSAWDSLNKAWKDRIDKLEE 318 PF00435.11.fs: domain 4 of 12, from 321 to 428: score 22.6, E = 3.3e-06 *->lllqqFqrdaddlesWieek.ealLssedyegkdleevqaLlkqlkH + + q+q ++ + W + ++ +l+s + g dle+v++ + + KIAA0728 321 QAAVQYQDGLQAVFDWVDIAgGKLASMSPI-GTDLETVKQQIE--EL 364 kaleaelaahqdrvealninelaekLiideghyas..eeiqerleeLner k+++ e ++q +e ln ++ae L + ++s++ +q+ l eL KIAA0728 365 KQFKSEAYQQQIEMERLN--HQAELL-LKKVTEESdkHTVQDPLMELKLI 411 WeqLlelaaeRkqkLee<-* W++L+e++ R++kLe KIAA0728 412 WDSLEERIINRQHKLEG 428 PF00435.11.ls: domain 4 of 11, from 321 to 428: score 24.5, E = 0.00034 *->lllqqFqrdaddlesWieek.ealLssedyegkdleevqaLlkqlkH + + q+q ++ + W + ++ +l+s + g dle+v++ + + KIAA0728 321 QAAVQYQDGLQAVFDWVDIAgGKLASMSPI-GTDLETVKQQIE--EL 364 kaleaelaahqdrvealninelaekLiideghyas..eeiqerleeLner k+++ e ++q +e ln ++ae L + ++s++ +q+ l eL KIAA0728 365 KQFKSEAYQQQIEMERLN--HQAELL-LKKVTEESdkHTVQDPLMELKLI 411 WeqLlelaaeRkqkLee<-* W++L+e++ R++kLe KIAA0728 412 WDSLEERIINRQHKLEG 428 PF00435.11.fs: domain 5 of 12, from 431 to 537: score 74.8, E = 9.7e-22 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk l l qFq+ +d+l++W++ +e lLs++ g d+ +++ l kH KIAA0728 431 LALGQFQHALDELLAWLTHTEGLLSEQKPVGGDPKAIEIELA--KHH 475 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq l++++ ahq vea+n + +++Li+++ ++++ ++q +le Ln+rW++ KIAA0728 476 VLQNDVLAHQSTVEAVN--KAGNDLIESSAGEEASNLQNKLEVLNQRWQN 523 LlelaaeRkqkLee<-* +le +++Rkq+L KIAA0728 524 VLEKTEQRKQQLDG 537 PF00435.11.ls: domain 5 of 11, from 431 to 537: score 76.8, E = 6.5e-20 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk l l qFq+ +d+l++W++ +e lLs++ g d+ +++ l kH KIAA0728 431 LALGQFQHALDELLAWLTHTEGLLSEQKPVGGDPKAIEIELA--KHH 475 aleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeq l++++ ahq vea+n + +++Li+++ ++++ ++q +le Ln+rW++ KIAA0728 476 VLQNDVLAHQSTVEAVN--KAGNDLIESSAGEEASNLQNKLEVLNQRWQN 523 LlelaaeRkqkLee<-* +le +++Rkq+L KIAA0728 524 VLEKTEQRKQQLDG 537 PF00435.11.ls: domain 6 of 11, from 540 to 646: score 45.8, E = 1.3e-10 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH ++ F+ +++dl++W++++e++L +s + g +e++++ l H KIAA0728 540 RQAKGFHGEIEDLQQWLTDTERHLlASKPL-GGLPETAKEQLN--VH 583 kaleaelaahqdrvealninelaekLiideg.hyaseeiqerleeLnerW + a +a ++ ++l + ++++ +++ ++ a+ +i + +++L e+W KIAA0728 584 MEVCAAFEAKEETYKSLM--QKGQQM-LARCpKSAETNIDQDINNLKEKW 630 eqLlelaaeRkqkLee<-* e++++ + eRk kLee KIAA0728 631 ESVETKLNERKTKLEE 646 PF00435.11.fs: domain 6 of 12, from 540 to 646: score 43.9, E = 1.5e-12 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH ++ F+ +++dl++W++++e++L +s + g +e++++ l H KIAA0728 540 RQAKGFHGEIEDLQQWLTDTERHLlASKPL-GGLPETAKEQLN--VH 583 kaleaelaahqdrvealninelaekLiideg.hyaseeiqerleeLnerW + a +a ++ ++l + ++++ +++ ++ a+ +i + +++L e+W KIAA0728 584 MEVCAAFEAKEETYKSLM--QKGQQM-LARCpKSAETNIDQDINNLKEKW 630 eqLlelaaeRkqkLee<-* e++++ + eRk kLee KIAA0728 631 ESVETKLNERKTKLEE 646 PF00435.11.fs: domain 7 of 12, from 649 to 755: score 43.0, E = 2.9e-12 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH +l+ +F++ ++d+ +W++++e+ L+ + l++v + H KIAA0728 649 NLAMEFHNSLQDFINWLTQAEQTLnVASRP-SLILDTVLFQID--EH 692 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe k + +e++ h++++ +l+ +++ L+ +++++ i+ l + +rWe KIAA0728 693 KVFANEVNSHREQIIELD--KTGTHLKYFSQKQDVVLIKNLLISVQSRWE 740 qLlelaaeRkqkLee<-* ++ +++ eR + L + KIAA0728 741 KVVQRLVERGRSLDD 755 PF00435.11.ls: domain 7 of 11, from 649 to 755: score 44.9, E = 2.5e-10 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH +l+ +F++ ++d+ +W++++e+ L+ + l++v + H KIAA0728 649 NLAMEFHNSLQDFINWLTQAEQTLnVASRP-SLILDTVLFQID--EH 692 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe k + +e++ h++++ +l+ +++ L+ +++++ i+ l + +rWe KIAA0728 693 KVFANEVNSHREQIIELD--KTGTHLKYFSQKQDVVLIKNLLISVQSRWE 740 qLlelaaeRkqkLee<-* ++ +++ eR + L + KIAA0728 741 KVVQRLVERGRSLDD 755 PF00435.11.fs: domain 8 of 12, from 758 to 865: score 37.1, E = 1.6e-10 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH +++ qF+ + l++W+ee e+ L+s+ ++ ++d++ +++ l +H KIAA0728 758 KRAKQFHEAWSKLMEWLEESEKSLdSELEI-ANDPDKIKTQLA--QH 801 kaleaelaahqdrvealninelaekLiideg.hyaseeiqerleeLnerW k++++ l a ++ n +++ L++ + +++ + ++l+eL+++W KIAA0728 802 KEFQKSLGAKHSVYDTTN--RTGRSLKEKTSlADDNLKLDDMLSELRDKW 849 eqLlelaaeRkqkLee<-* + ++ eR++kLee KIAA0728 850 DTICGKSVERQNKLEE 865 PF00435.11.ls: domain 8 of 11, from 758 to 865: score 39.0, E = 1.5e-08 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH +++ qF+ + l++W+ee e+ L+s+ ++ ++d++ +++ l +H KIAA0728 758 KRAKQFHEAWSKLMEWLEESEKSLdSELEI-ANDPDKIKTQLA--QH 801 kaleaelaahqdrvealninelaekLiideg.hyaseeiqerleeLnerW k++++ l a ++ n +++ L++ + +++ + ++l+eL+++W KIAA0728 802 KEFQKSLGAKHSVYDTTN--RTGRSLKEKTSlADDNLKLDDMLSELRDKW 849 eqLlelaaeRkqkLee<-* + ++ eR++kLee KIAA0728 850 DTICGKSVERQNKLEE 865 PF00435.11.ls: domain 9 of 11, from 866 to 973: score 41.3, E = 3e-09 *->lllq..qFqrdaddlesWieekealL.ssedyegkdleevqaLlkql ll+++qF ++ l W+ e++L ++ + d++ v++L + KIAA0728 866 ALLFsgQFTDALQALIDWLYRVEPQLaEDQPV-HGDIDLVMNLID-- 909 kHkaleaelaahqdrvealninelaekLiideghyaseeiqerleeLner Hka+++el + v+al a++L i+++ ++s ++ +++eL +r KIAA0728 910 NHKAFQKELGKRTSSVQALK--RSAREL-IEGSRDDSSWVKVQMQELSTR 956 WeqLlelaaeRkqkLee<-* We +++l +++ +Le+ KIAA0728 957 WETVCALSISKQTRLEA 973 PF00435.11.fs: domain 9 of 12, from 872 to 973: score 41.7, E = 7.1e-12 *->qFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkHkale qF ++ l W+ e++L ++ + d++ v++L + Hka++ KIAA0728 872 QFTDALQALIDWLYRVEPQLaEDQPV-HGDIDLVMNLID--NHKAFQ 915 aelaahqdrvealninelaekLiideghyaseeiqerleeLnerWeqLle +el + v+al a++L i+++ ++s ++ +++eL +rWe +++ KIAA0728 916 KELGKRTSSVQALK--RSAREL-IEGSRDDSSWVKVQMQELSTRWETVCA 962 laaeRkqkLee<-* l +++ +Le+ KIAA0728 963 LSISKQTRLEA 973 PF00435.11.fs: domain 10 of 12, from 976 to 1082: score 36.0, E = 3.5e-10 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk ++++F++ + l++W+ e+e+ L + + d++++++L + +Hk KIAA0728 976 RQAEEFHSVVHALLEWLAEAEQTLRFHGVLPDDEDALRTLID--QHK 1020 aleaelaahqdrvealninelaekLiideghyas.eeiqerleeLnerWe ++++ l+ + +++ + ++++ + ++ h++s i++++ +++r+e KIAA0728 1021 EFMKKLEEKRAELNKAT--TMGDTV-LAICHPDSiTTIKHWITIIRARFE 1067 qLlelaaeRkqkLee<-* ++l++a++++q+L KIAA0728 1068 EVLAWAKQHQQRLAS 1082 PF00435.11.ls: domain 10 of 11, from 976 to 1082: score 37.9, E = 3.2e-08 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk ++++F++ + l++W+ e+e+ L + + d++++++L + +Hk KIAA0728 976 RQAEEFHSVVHALLEWLAEAEQTLRFHGVLPDDEDALRTLID--QHK 1020 aleaelaahqdrvealninelaekLiideghyas.eeiqerleeLnerWe ++++ l+ + +++ + ++++ + ++ h++s i++++ +++r+e KIAA0728 1021 EFMKKLEEKRAELNKAT--TMGDTV-LAICHPDSiTTIKHWITIIRARFE 1067 qLlelaaeRkqkLee<-* ++l++a++++q+L KIAA0728 1068 EVLAWAKQHQQRLAS 1082 PF00435.11.ls: domain 11 of 11, from 1085 to 1222: score 2.9, E = 0.023 *->lllqqFqrdaddlesWieekealLssedye..gkdleevqaLlkqlk l q ++ l++W++ +e+ L++ d+e ++ +eev+aL KIAA0728 1085 AGLIAKQELLEALLAWLQWAETTLTDKDKEviPQEIEEVKALIA--E 1129 HkaleaelaahqdrvealninelaekLiideghyas.............. H+++++e+ q+ v++++ ++ ++ ++ +++ + ++++ +++ KIAA0728 1130 HQTFMEEMTRKQPDVDKVT--KTYKRR-AADPSSLQshipvldkgragrk 1176 ................eeiqerleeLnerWeqLlelaaeRkqkLee<-* + + ++ +++++++ e r++ L ++W+q+ la eR++kL + KIAA0728 1177 rfpasslypsgsqtqiETKNPRVNLLVSKWQQVWLLALERRRKLND 1222 PF00036.22.fs: domain 1 of 2, from 1255 to 1283: score 27.5, E = 1.9e-06 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++ ++F+ +DkD+DGkI+++Ef++++ + KIAA0728 1255 RVMDFFRRIDKDQDGKITRQEFIDGILSS 1283 PF00036.22.ls: domain 1 of 2, from 1255 to 1283: score 29.5, E = 1.1e-05 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++ ++F+ +DkD+DGkI+++Ef++++ + KIAA0728 1255 RVMDFFRRIDKDQDGKITRQEFIDGILSS 1283 PF00036.22.ls: domain 2 of 2, from 1291 to 1319: score 28.2, E = 2.8e-05 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* e+ ++ ++fD+DgDG+I++ Ef+aal+ KIAA0728 1291 EMSAVADIFDRDGDGYIDYYEFVAALHPN 1319 PF00036.22.fs: domain 2 of 2, from 1291 to 1319: score 26.2, E = 4.4e-06 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* e+ ++ ++fD+DgDG+I++ Ef+aal+ KIAA0728 1291 EMSAVADIFDRDGDGYIDYYEFVAALHPN 1319 PF02187.8.ls: domain 1 of 1, from 1330 to 1408: score 172.8, E = 8e-49 *->dkldDeVkrivedPPCkCpdkFrveqvseGKYR......fGDsqlLr dk++DeV+r+v++ CkC+++F+veq++++KYR +++fGDsq+Lr KIAA0728 1330 DKIEDEVTRQVAK--CKCAKRFQVEQIGDNKYRfflgnqFGDSQQLR 1374 lvrilrshVMVRVGGGWetLdeyLlKhDPCRasq<-* lvrilrs+VMVRVGGGW++Lde+L+K+DPCRa++ KIAA0728 1375 LVRILRSTVMVRVGGGWMALDEFLVKNDPCRAKG 1408 PF02187.8.fs: domain 1 of 1, from 1330 to 1408: score 170.8, E = 1.6e-51 *->dkldDeVkrivedPPCkCpdkFrveqvseGKYR......fGDsqlLr dk++DeV+r+v++ CkC+++F+veq++++KYR +++fGDsq+Lr KIAA0728 1330 DKIEDEVTRQVAK--CKCAKRFQVEQIGDNKYRfflgnqFGDSQQLR 1374 lvrilrshVMVRVGGGWetLdeyLlKhDPCRasq<-* lvrilrs+VMVRVGGGW++Lde+L+K+DPCRa++ KIAA0728 1375 LVRILRSTVMVRVGGGWMALDEFLVKNDPCRAKG 1408 //