hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11184057/chunk_1/iprscan-20080502-11184057.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0726 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00112 72.9 4.1e-17 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00112 1/2 67 160 .. 1 121 [] 56.9 2.6e-12 SM00112 2/2 183 261 .. 1 121 [] 16.0 0.065 Alignments of top-scoring domains: SM00112: domain 1 of 2, from 67 to 160: score 56.9, E = 2.6e-12 *->vsAtDaDsgsngeNgkpgdaevvtYsils.............lFsId + A D+D++ ++Y + + + ++++ + + +d KIAA0726 67 LFALDKDAP-------------LRYAGEIcgfrlhgsgvpfeAVILD 100 petGtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgG + tG e+ i++++p D E+q +e+t+t++A D G KIAA0726 101 KATG---------EGLIRAKEPVDCEAQ---------KEHTFTIQAYDCG 132 gpppgdssptrksqqtpplsstatvtvtVlDvNDNaP<-* + p g++ + +s atv+v+V DvN+ aP KIAA0726 133 EGPDGANTK---------KSHKATVHVRVNDVNEFAP 160 SM00112: domain 2 of 2, from 183 to 261: score 16.0, E = 0.065 *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL v A+D D + ++ + Y+il ++++F Id ++ KIAA0726 183 VEAIDGDCS--PQYSQ-----ICYYEILTpntPFLIDNDGN------ 216 vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt i t+ L + Y +tv+A D G + KIAA0726 217 ------IENTEKLQYSGE---------RLYKFTVTAYDCGKKR------- 244 rksqqtpplsstatvtvtVlDvNDNaP<-* + a+v ++V+ P KIAA0726 245 --------AADDAEVEIQVKP--TCKP 261 //