hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11152037/chunk_1/iprscan-20080502-11152037.nocrc
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Query sequence: KIAA0724
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08389.2.fs Exportin 1-like protein                        142.6    9.5e-40   2
PF08389.2.ls Exportin 1-like protein                        141.1    2.8e-39   1
PF03810.9.fs Importin-beta N-terminal domain                 33.6    1.3e-08   1
PF03810.9.ls Importin-beta N-terminal domain                 35.4    1.8e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03810.9.fs   1/1     129   195 ..     1    85 []    33.6  1.3e-08
PF03810.9.ls   1/1     129   195 ..     1    85 []    35.4  1.8e-07
PF08389.2.fs   1/2     200   347 ..     1   171 []   139.2    1e-38
PF08389.2.ls   1/1     200   347 ..     1   171 []   141.1  2.8e-39

Alignments of top-scoring domains:
PF03810.9.fs: domain 1 of 1, from 129 to 195: score 33.6, E = 1.3e-08
                   *->AEkqLeqlekqklPgFllaLlqIlansdtssdlqvRqlAalyLKNlI
                      A+k+L q++ +  P+++ + +q+l   ++ + +++++++a+ L+ +I
    KIAA0724   129    AQKWLMQAQVS--PQAWHFSWQLL---QPDKVPEIQYFGASALHIKI 170  

                   trhWnshrkqggyeqrwlslpeeekeqIknnllnllgs<-*
                   +r+W+              +p ++ e++k +l + +     
    KIAA0724   171 SRYWS-------------DIPTDQYESLKAQLFTQITR    195  

PF03810.9.ls: domain 1 of 1, from 129 to 195: score 35.4, E = 1.8e-07
                   *->AEkqLeqlekqklPgFllaLlqIlansdtssdlqvRqlAalyLKNlI
                      A+k+L q++ +  P+++ + +q+l   ++ + +++++++a+ L+ +I
    KIAA0724   129    AQKWLMQAQVS--PQAWHFSWQLL---QPDKVPEIQYFGASALHIKI 170  

                   trhWnshrkqggyeqrwlslpeeekeqIknnllnllgs<-*
                   +r+W+              +p ++ e++k +l + +     
    KIAA0724   171 SRYWS-------------DIPTDQYESLKAQLFTQITR    195  

PF08389.2.fs: domain 1 of 2, from 200 to 347: score 139.2, E = 1e-38
                   *->pkflrnKLalalaelakqewPnnWptffpdlvsllsss......psg
                      +k +++ L++ala la+ ++P+ Wp++++d+v+l+++ +++ +++  
    KIAA0724   200    SKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEdspvdgQGR 246  

                   cellLriLkvLpEEifdqdfsrtpltqdrfnnrlkdllrsqDcmeqilel
                   c +lL++L+vLpEE        ++l q r + +++ +l+++  + ++++l
    KIAA0724   247 CLALLELLTVLPEEFQT-----SRLPQYR-KGLVRTSLAVE--CGAVFPL 288  

                   llqiLessqsthssetqekAkqssellsatLkclgswlslgWipiglian
                   l+q+L++++s+            s++++++Lkc++sw++l ++p++++ +
    KIAA0724   289 LEQLLQQPSSP------------SCVRQKVLKCFSSWVQL-EVPLQDCEA 325  

                   vnpillnllfslLsgpesdpdlreaAveCL<-*
                       l++++f +L    +d++l++ +ve +   
    KIAA0724   326 ----LIQAAFAAL----QDSELFDSSVEAI    347  

PF08389.2.ls: domain 1 of 1, from 200 to 347: score 141.1, E = 2.8e-39
                   *->pkflrnKLalalaelakqewPnnWptffpdlvsllsss......psg
                      +k +++ L++ala la+ ++P+ Wp++++d+v+l+++ +++ +++  
    KIAA0724   200    SKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEdspvdgQGR 246  

                   cellLriLkvLpEEifdqdfsrtpltqdrfnnrlkdllrsqDcmeqilel
                   c +lL++L+vLpEE        ++l q r + +++ +l+++  + ++++l
    KIAA0724   247 CLALLELLTVLPEEFQT-----SRLPQYR-KGLVRTSLAVE--CGAVFPL 288  

                   llqiLessqsthssetqekAkqssellsatLkclgswlslgWipiglian
                   l+q+L++++s+            s++++++Lkc++sw++l ++p++++ +
    KIAA0724   289 LEQLLQQPSSP------------SCVRQKVLKCFSSWVQL-EVPLQDCEA 325  

                   vnpillnllfslLsgpesdpdlreaAveCL<-*
                       l++++f +L    +d++l++ +ve +   
    KIAA0724   326 ----LIQAAFAAL----QDSELFDSSVEAI    347  

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