hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11083608/chunk_1/iprscan-20080502-11083608.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0720
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 202.6    3.7e-56   1
SM00233                                                  49.5    4.4e-10   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00325     1/1     425   612 ..     1   211 []   202.6  3.7e-56
SM00233     1/1     670   771 ..     1    82 []    49.5  4.4e-10

Alignments of top-scoring domains:
SM00325: domain 1 of 1, from 425 to 612: score 202.6, E = 3.7e-56
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      +++ELl+TE++Y+r L+++++ fl  L++ ++s+   ll++ e ++l
    KIAA0720   425    AVWELLHTEASYIRKLRVIINLFLCCLLNLQESG---LLCEVEAERL 468  

                   FgpNieeiyefHrrFLdeLeerveewllskdl.Ksernsviedsgerigd
                   F+ Ni+ei ++Hrr++++ ++ v        l+K++r++ + ++g+ +  
    KIAA0720   469 FS-NIPEIAQLHRRLWASVMAPV--------LeKARRTRALLQPGDFLKG 509  

                   vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies
                   + +      ++fk+Y++Yc   +  +e  + L+  ++n+ F+++++++e+
    KIAA0720   510 FKMF----GSLFKPYIRYCMEEEGCMEYMRGLL--RDNDLFRAYITWAEK 553  

                   kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk
                   +p+c+     rl+L+++L kP+QRltkYpLLLk  l++t+ ++  +e + 
    KIAA0720   554 HPQCQ-----RLKLSDMLAKPHQRLTKYPLLLKSVLRKTE-EPRAKEAVV 597  

                   kAleaikelasqvNe<-*
                     ++++++++++vN+   
    KIAA0720   598 AMIGSVERFIHHVNA    612  

SM00233: domain 1 of 1, from 670 to 771: score 49.5, E = 4.4e-10
                   *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk.......kpkgsi
                      +++eG L++k++k+s +++y++Lf++ Ll +k  ++ ++++  ++++
    KIAA0720   670    LLLEGSLRMKEgKdSKMDVYCFLFTDLLLVTKAVkkaertrVIRPPL 716  

                   pLsgcsvre.p...cFeivt.dr......tlllqAeseeereeWvealqs
                    ++++ +re  ++++F +++ ++ ++  + +++qA+ +  ++ Wv+ + +
    KIAA0720   717 LVDKIVCRElRdpgSFLLIYlNEfhsavgAYTFQASGQALCRGWVDTIYN 766  

                   aiaka<-*
                   a++++   
    KIAA0720   767 AQNQL    771  

//