hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10474453/chunk_1/iprscan-20080502-10474453.nocrc
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Query sequence: KIAA0708
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00647                                                  82.8      4e-20   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00647    1/2    1376  1439 ..     1    78 []    63.2  3.3e-14
SM00647    2/2    1460  1515 ..     1    78 []    19.6    0.025

Alignments of top-scoring domains:
SM00647: domain 1 of 2, from 1376 to 1439: score 63.2, E = 3.3e-14
                   *->ekYerlllesyvesnpdlkwCPa.pdCsaairvtelstsrsaisgas
                       kYe+ ll++yves+++l+wC ++++C  +++ +             
    KIAA0708  1376    SKYEKALLRGYVESCSNLTWCTNpQGCDRILCRQ------------- 1409 

                   deegcnrvtCprkCgfsFCfrCkv.ewHspvsC<-*
                    + gc   tC+ kCg++ Cf+C+ +e+H+p sC   
    KIAA0708  1410 -GLGC-GTTCS-KCGWASCFNCSFpEAHYPASC    1439 

SM00647: domain 2 of 2, from 1460 to 1515: score 19.6, E = 0.025
                   *->ekYerlllesyvesnpdlkwCPapdCsaairvtelstsrsaisgasd
                         + + l +++ +      CP   C+a i++               
    KIAA0708  1460    ---QSKHLAKLISK-----RCP--SCQAPIEKN-------------- 1482 

                   eegcnrvtCprkCgfsFCfrCkvew...Hspv.sC<-*
                    egc ++tC  kC++ FC+rC++ w+++H +  +C   
    KIAA0708  1483 -EGCLHMTCA-KCNHGFCWRCLKSWkpnHKDYyNC    1515 

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