hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10474453/chunk_1/iprscan-20080502-10474453.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0708 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00888.12.fs Cullin family 315.1 1.1e-91 1 PF00888.12.ls Cullin family 303.3 4.2e-88 1 PF01485.11.fs IBR domain 84.0 9.3e-26 2 PF01485.11.ls IBR domain 77.9 2.9e-20 1 PF03256.7.ls Anaphase-promoting complex, subunit 10 (APC1 -66.7 0.0014 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03256.7.ls 1/1 376 552 .. 1 222 [] -66.7 0.0014 PF00888.12.ls 1/1 608 1075 .. 1 656 [] 303.3 4.2e-88 PF00888.12.fs 1/1 651 1075 .. 296 656 .] 315.1 1.1e-91 PF01485.11.fs 1/2 1376 1439 .. 1 72 [] 76.1 2.8e-23 PF01485.11.ls 1/1 1376 1439 .. 1 72 [] 77.9 2.9e-20 Alignments of top-scoring domains: PF03256.7.ls: domain 1 of 1, from 376 to 552: score -66.7, E = 0.0014 *->itanatpssrgdlsqkeleGfaevlsqrvreigelAvW...slSScK + + + + +G +e+ e W++ +SS KIAA0708 376 THQPINIPFFDVFLRHLCQGS-------SVEVKEDKCWekvEVSSNP 415 pGngVlfllRDdnldTyWQSDGsqP.HlvnIqFsKktdIkyvaiYldykl + l D+n TyW S+Gs +H + ++ + + ++ + + + KIAA0708 416 HRASKL--T-DHNPKTYWESNGSTGsHYITLHMHRGVLVRQLTLLVASE- 461 DESYtPskirVraGtgfnDl.qevktleveeGQPtGWVhIplredAGDDG D SY P ++ V G++++ ++e+ t+ v + + l+e KIAA0708 462 DSSYMPARVVVFGGDSTSCIgTELNTVNVMP-SAS---RVILLEN----- 502 DDVEGGGPNDGGDgreDDkllrvfmlQiavlaNHqnGrDthvRqIriYgP +r ++ +Qi + +q G Dt vR+ ++gP KIAA0708 503 ------------LNRF--WPI----IQIRIKRCQQGGIDTRVRGVEVLGP 534 viershvphqlfhgNHATptsvdfqtyatl<-* + lf + + ++ l KIAA0708 535 KPT----FWPLFRE--------QLCRRTCL 552 PF00888.12.ls: domain 1 of 1, from 608 to 1075: score 303.3, E = 4.2e-88 *->WekLrdaidkilt..nlknfsslsymeLYtaVYnmCtstsavphklg We L + + + +t+++ +++s l + KIAA0708 608 WEALVSPLVQNITspDAEGVSALGW---------------------- 632 ekLYnrLkeyleeyvkalrkslleisddenlLkeyikeWkdfttsmkmin KIAA0708 - -------------------------------------------------- - difmYLdRyyvkrnidgkkevyeiyeLgLdiWrellfdnikdrlidalLe l+d+ KIAA0708 633 -----------------------------------LLDQ----------- 636 lIekeRlGeaidrliknvidmlvsLgldekDmkkqklevYkedFEkpFLe KIAA0708 - -------------------------------------------------- - aTseFYkkesskfLqensvseYmkkvEkrLeeEeeRvrlYLhsstekkLi Y++ ++E R KIAA0708 637 ---------------------YLE------QRETSRNP------------ 647 evvekvLIekHletLlmehsefqLldnnkieDLrrMYrLlsRvpnGLepl lsR KIAA0708 648 ---------------------------------------LSR-------- 650 rkilekhvkkeGlaavskla.............................. ++ + ++v++ ++ +v+ + ++++++++++++ +++++++++++ +++ KIAA0708 651 AASFASRVRRLCHLLVHVEPppgpspepstrpfsknskgrdrspapspvl 700 .........................aetdpkdyVeeLLelhdkydslvne ++++ ++ ++ + +++ ++ a++ + d+V + ++l++++++ +e KIAA0708 701 pssslrnitqcwlsvvqeqvsrflaAAWRAPDFVPRYCKLYEHLQRAGSE 750 aFnnDplFlnaLdkAfesfiNsnvvtkrskspELLAkYcDdlLKKgs... F+ + F+ aL++ f + + +++++ +++ +E++A+Y+D+++++g+ ++ KIAA0708 751 LFGPRAAFMLALRSGFSGALLQQSFLTAAHMSEQFARYIDQQIQGGLigg 800 .KgleeeeleekldkiivlfkyiedKDvFekfYrkmLAkRLLngkSasLd g+e+ + +++ + i++++ +e ++Fe+fY++++A+RLL+ S +L+ KIAA0708 801 aPGVEMLGQLQRHLEPIMVLSGLELATTFEHFYQHYMADRLLSFGSSWLE 850 daEkrmiskLKqvecGyefTsKLegMfkDislSkelnnsFknhlennndn +a +++i+++++ ++ ++ M++ +s+S+el+++F+ ++ +++d+ KIAA0708 851 GAVLEQIGLCFP-------NRLPQLMLQSLSTSEELQRQFHLFQLQRLDK 893 ldlkled......eene.E...............gidlsvlvLstgfWPt l l++ed+++++ ee+e+E+++++ +++ +++++ +s+lvLs+ +WP+ KIAA0708 894 LFLEQEDeeekrlEEEEeEeeeeeaekelfiedpSPAISILVLSPRCWPV 943 lp.epsin..fnLPeelekalerFeefYlkkhsgp..d....RkLtWlhs +p ++ ++++ +LP e+++al+rF++fY++++++p d +++R+L+W++ KIAA0708 944 SPlCYLYHprKCLPTEFCDALDRFSSFYSQSQNHPvlDmgphRRLQWTW- 992 LGkgelkaefndgtkskyeltVstyQmavLLlFNdkeeltyeelqeatqi LG++el++ ++l+Vst+Qm++LL FN++ee+++e+l++ ++ KIAA0708 993 LGRAELQFGK-------QILHVSTVQMWLLLKFNQTEEVSVETLLKDSDL 1035 pddeLrrtLqsLlkakvllllllryetigekspkdkeispntkfslNsdf ++++L ++L +L+++ ++l + ++++++ + + +l ++ KIAA0708 1036 SPELLLQALVPLTSGNGPL-----------TLHEGQDFPHGGVLRLHEPG 1074 t<-* KIAA0708 1075 P 1075 PF00888.12.fs: domain 1 of 1, from 651 to 1075: score 315.1, E = 1.1e-91 *->rkilekhvkkeGlaavskla........................... ++ + ++v++ ++ +v+ + ++++++++++++ +++++++++++ ++ KIAA0708 651 AASFASRVRRLCHLLVHVEPppgpspepstrpfsknskgrdrspaps 697 ............................aetdpkdyVeeLLelhdkydsl + ++++ ++ ++ + +++ ++ a++ + d+V + ++l++++++ KIAA0708 698 pvlpssslrnitqcwlsvvqeqvsrflaAAWRAPDFVPRYCKLYEHLQRA 747 vneaFnnDplFlnaLdkAfesfiNsnvvtkrskspELLAkYcDdlLKKgs +e F+ + F+ aL++ f + + +++++ +++ +E++A+Y+D+++++g+ KIAA0708 748 GSELFGPRAAFMLALRSGFSGALLQQSFLTAAHMSEQFARYIDQQIQGGL 797 ....KgleeeeleekldkiivlfkyiedKDvFekfYrkmLAkRLLngkSa ++ g+e+ + +++ + i++++ +e ++Fe+fY++++A+RLL+ S KIAA0708 798 iggaPGVEMLGQLQRHLEPIMVLSGLELATTFEHFYQHYMADRLLSFGSS 847 sLddaEkrmiskLKqvecGyefTsKLegMfkDislSkelnnsFknhlenn +L++a +++i+++++ ++ ++ M++ +s+S+el+++F+ ++ ++ KIAA0708 848 WLEGAVLEQIGLCFP-------NRLPQLMLQSLSTSEELQRQFHLFQLQR 890 ndnldlkled......eene.E...............gidlsvlvLstgf +d+l l++ed+++++ ee+e+E+++++ +++ +++++ +s+lvLs+ + KIAA0708 891 LDKLFLEQEDeeekrlEEEEeEeeeeeaekelfiedpSPAISILVLSPRC 940 WPtlp.epsin..fnLPeelekalerFeefYlkkhsgp..d....RkLtW WP++p ++ ++++ +LP e+++al+rF++fY++++++p d +++R+L+W KIAA0708 941 WPVSPlCYLYHprKCLPTEFCDALDRFSSFYSQSQNHPvlDmgphRRLQW 990 lhsLGkgelkaefndgtkskyeltVstyQmavLLlFNdkeeltyeelqea ++ LG++el++ ++l+Vst+Qm++LL FN++ee+++e+l++ KIAA0708 991 TW-LGRAELQFGK-------QILHVSTVQMWLLLKFNQTEEVSVETLLKD 1032 tqipddeLrrtLqsLlkakvllllllryetigekspkdkeispntkfslN ++++++L ++L +L+++ ++l + ++++++ + + +l KIAA0708 1033 SDLSPELLLQALVPLTSGNGPL-----------TLHEGQDFPHGGVLRLH 1071 sdft<-* ++ KIAA0708 1072 EPGP 1075 PF01485.11.fs: domain 1 of 2, from 1376 to 1439: score 76.1, E = 2.8e-23 *->eKYerlllesyvesnkdlkwCPa.pdCsyivrvtdlssgskeepssr +KYe++ll+ yves+++l+wC ++++C++i+ ++ + ++ KIAA0708 1376 SKYEKALLRGYVESCSNLTWCTNpQGCDRIL-CR--------QGLGC 1413 rveCskGCgfeFCfnCke.ewHgplsC<-* +Csk Cg++ CfnC ++e+H+p+sC KIAA0708 1414 GTTCSK-CGWASCFNCSFpEAHYPASC 1439 PF01485.11.ls: domain 1 of 1, from 1376 to 1439: score 77.9, E = 2.9e-20 *->eKYerlllesyvesnkdlkwCPa.pdCsyivrvtdlssgskeepssr +KYe++ll+ yves+++l+wC ++++C++i+ ++ + ++ KIAA0708 1376 SKYEKALLRGYVESCSNLTWCTNpQGCDRIL-CR--------QGLGC 1413 rveCskGCgfeFCfnCke.ewHgplsC<-* +Csk Cg++ CfnC ++e+H+p+sC KIAA0708 1414 GTTCSK-CGWASCFNCSFpEAHYPASC 1439 //