hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10442013/chunk_1/iprscan-20080502-10442013.nocrc
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Query sequence: KIAA0706
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00225.13.ls Kinesin motor domain                           588.7   5.2e-174   1
PF00225.13.fs Kinesin motor domain                           587.0   1.7e-173   1
PF00498.16.fs FHA domain                                      42.0    8.3e-12   1
PF00498.16.ls FHA domain                                      43.7    5.8e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00225.13.fs   1/1      31   369 ..     1   424 []   587.0 1.7e-173
PF00225.13.ls   1/1      31   369 ..     1   424 []   588.7 5.2e-174
PF00498.16.fs   1/1     543   610 ..     1    94 []    42.0  8.3e-12
PF00498.16.ls   1/1     543   610 ..     1    94 []    43.7  5.8e-10

Alignments of top-scoring domains:
PF00225.13.fs: domain 1 of 1, from 31 to 369: score 587.0, E = 1.7e-173
                   *->RvRPlnerEksrgssdvvnv..sedvessvitn.gkektFtFDkVFd
                      RvRP+n+rE+s ++++vv++++  + +++++++++ +k+FtFD+ ++
    KIAA0706    31    RVRPFNARETSQDAKCVVSMqgNTTSIINPKQSkDAPKSFTFDYSYW 77   

                   peatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKT
                   ++++    e+p++Asq++vy++++++++ +++eGyNv+IFAYGQTG+GK+
    KIAA0706    78 SHTS---TEdPqFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKS 124  

                   YTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpv
                   YTM+G  +               + + Gi P  +edlF+r++e++     
    KIAA0706   125 YTMMGRQE---------------PGQQGIVPQLCEDLFSRVSENQSA--- 156  

                   fKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIY
                                                       +l++sv+vSy+EIY
    KIAA0706   157 ------------------------------------QLSYSVEVSYMEIY 170  

                   NEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGL
                   +E++rDLL+p+             ++ + Lr+re+p  G     +yV++L
    KIAA0706   171 CERVRDLLNPK-------------SRGS-LRVREHPILG-----PYVQDL 201  

                   teveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntd
                   +   Vts+ ++ +l++ Gnk Rtva+T+mNe+SSRSHa+Fti+ +qr +d
    KIAA0706   202 SKLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHD 251  

                   ttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaa
                   + ++   +         +vsk++LVDLAGSERa+ +g   A g RLkE+a
    KIAA0706   252 QLTGLDSE---------KVSKISLVDLAGSERADSSG---ARGMRLKEGA 289  

                   nINkSLsaLGnVInALadnq....kssHiPYRDSKLTrLLQDSLGGGDNs
                   nINkSL +LG+VI+ALad q++++ks++iPYRDS+LT+LL++ LGG  Ns
    KIAA0706   290 NINKSLTTLGKVISALADMQskkrKSDFIPYRDSVLTWLLKENLGG--NS 337  

                   KTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   +T+MIa +SP++     nyeETLsTLr+A+R K+I+   
    KIAA0706   338 RTAMIAALSPADI----NYEETLSTLRYADRTKQIR    369  

PF00225.13.ls: domain 1 of 1, from 31 to 369: score 588.7, E = 5.2e-174
                   *->RvRPlnerEksrgssdvvnv..sedvessvitn.gkektFtFDkVFd
                      RvRP+n+rE+s ++++vv++++  + +++++++++ +k+FtFD+ ++
    KIAA0706    31    RVRPFNARETSQDAKCVVSMqgNTTSIINPKQSkDAPKSFTFDYSYW 77   

                   peatQelse.p.YAsqefvyestakplvesvleGyNvtIFAYGQTGSGKT
                   ++++    e+p++Asq++vy++++++++ +++eGyNv+IFAYGQTG+GK+
    KIAA0706    78 SHTS---TEdPqFASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKS 124  

                   YTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkpv
                   YTM+G  +               + + Gi P  +edlF+r++e++     
    KIAA0706   125 YTMMGRQE---------------PGQQGIVPQLCEDLFSRVSENQSA--- 156  

                   fKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIY
                                                       +l++sv+vSy+EIY
    KIAA0706   157 ------------------------------------QLSYSVEVSYMEIY 170  

                   NEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGL
                   +E++rDLL+p+             ++ + Lr+re+p  G     +yV++L
    KIAA0706   171 CERVRDLLNPK-------------SRGS-LRVREHPILG-----PYVQDL 201  

                   teveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntd
                   +   Vts+ ++ +l++ Gnk Rtva+T+mNe+SSRSHa+Fti+ +qr +d
    KIAA0706   202 SKLAVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHD 251  

                   ttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaa
                   + ++   +         +vsk++LVDLAGSERa+ +g   A g RLkE+a
    KIAA0706   252 QLTGLDSE---------KVSKISLVDLAGSERADSSG---ARGMRLKEGA 289  

                   nINkSLsaLGnVInALadnq....kssHiPYRDSKLTrLLQDSLGGGDNs
                   nINkSL +LG+VI+ALad q++++ks++iPYRDS+LT+LL++ LGG  Ns
    KIAA0706   290 NINKSLTTLGKVISALADMQskkrKSDFIPYRDSVLTWLLKENLGG--NS 337  

                   KTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   +T+MIa +SP++     nyeETLsTLr+A+R K+I+   
    KIAA0706   338 RTAMIAALSPADI----NYEETLSTLRYADRTKQIR    369  

PF00498.16.fs: domain 1 of 1, from 543 to 610: score 42.0, E = 8.3e-12
                   *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf
                      +++G            d di l g++i  +H++++  ++ +g +   
    KIAA0706   543    TRVGQ----------VDMDIKLTGqFIREQHCLFRSIPQPDGEVVV- 578  

                   rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                             +l++++++     t+vNgk +  +ep +LksG++i +G  
    KIAA0706   579 ----------TLEPCEGAE----TYVNGKLV--TEPLVLKSGNRIVMG   610  

                   *
                    
    KIAA0706     -   -    

PF00498.16.ls: domain 1 of 1, from 543 to 610: score 43.7, E = 5.8e-10
                   *->vtiGRdsdsddilldddqdiqldg.siSrrHaeieykdggvglelaf
                      +++G            d di l g++i  +H++++  ++ +g +   
    KIAA0706   543    TRVGQ----------VDMDIKLTGqFIREQHCLFRSIPQPDGEVVV- 578  

                   rpaqvkefgvylrDlssknlnGatfvNgkrlgngepvrLksGdvirlG<-
                             +l++++++     t+vNgk +  +ep +LksG++i +G  
    KIAA0706   579 ----------TLEPCEGAE----TYVNGKLV--TEPLVLKSGNRIVMG   610  

                   *
                    
    KIAA0706     -   -    

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