hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10373749/chunk_1/iprscan-20080502-10373749.nocrc
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Query sequence: KIAA0702
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01699.14.ls Sodium/calcium exchanger protein               141.5    2.1e-39   1
PF01699.14.fs Sodium/calcium exchanger protein               141.0    2.9e-39   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01699.14.fs   1/2     471   603 ..     1   139 []   139.5  8.3e-39
PF01699.14.ls   1/1     471   603 ..     1   139 []   141.5  2.1e-39

Alignments of top-scoring domains:
PF01699.14.fs: domain 1 of 2, from 471 to 603: score 139.5, E = 8.3e-39
                   *->lliilladllvdsaeaiaevlgisptviGlTllAlgtslPEliasii
                      +l i++ +++v+++ +i ++l is+ v+G+T++A+g+s+PEl++s+i
    KIAA0702   471    ALAIVCDEYFVPALGVITDKLQISEDVAGATFMAAGGSAPELFTSLI 517  

                   aalkrlgtgtekkgdlalGnviGSnifNillvlGlaalispir..vlg.p
                    ++         + ++++G+++GS++fNil+v+G+++l+s  + + ++ p
    KIAA0702   518 GVFI----S---HSNVGIGTIVGSAVFNILFVIGTCSLFSREIlnLTWwP 560  

                   lsldfsllllvtlllllflllsdgrlsrleGlvLlllYivyllfl<-*
                   l +d+s+++l +++l+lf+l  d  + ++e+l+Lll+Y++y++ +   
    KIAA0702   561 LFRDVSFYILDLIMLILFFL--DSLIAWWESLLLLLAYAFYVFTM    603  

PF01699.14.ls: domain 1 of 1, from 471 to 603: score 141.5, E = 2.1e-39
                   *->lliilladllvdsaeaiaevlgisptviGlTllAlgtslPEliasii
                      +l i++ +++v+++ +i ++l is+ v+G+T++A+g+s+PEl++s+i
    KIAA0702   471    ALAIVCDEYFVPALGVITDKLQISEDVAGATFMAAGGSAPELFTSLI 517  

                   aalkrlgtgtekkgdlalGnviGSnifNillvlGlaalispir..vlg.p
                    ++         + ++++G+++GS++fNil+v+G+++l+s  + + ++ p
    KIAA0702   518 GVFI----S---HSNVGIGTIVGSAVFNILFVIGTCSLFSREIlnLTWwP 560  

                   lsldfsllllvtlllllflllsdgrlsrleGlvLlllYivyllfl<-*
                   l +d+s+++l +++l+lf+l  d  + ++e+l+Lll+Y++y++ +   
    KIAA0702   561 LFRDVSFYILDLIMLILFFL--DSLIAWWESLLLLLAYAFYVFTM    603  

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