hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10341895/chunk_1/iprscan-20080502-10341895.nocrc
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Query sequence: KIAA0700
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF08295.2.ls  Histone deacetylase (HDAC) interacting    196.0    8.2e-56   1
PF08295.2.fs  Histone deacetylase (HDAC) interacting    194.1    3.2e-55   1
PF02671.11.ls Paired amphipathic helix repeat           155.7    1.1e-43   3
PF02671.11.fs Paired amphipathic helix repeat           149.7    7.4e-42   3

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF02671.11.fs   1/3      66   112 ..     1    47 []    63.8  3.7e-16
PF02671.11.ls   1/3      66   112 ..     1    47 []    65.8  1.3e-16
PF02671.11.ls   2/3     187   243 ..     1    47 []    54.2  4.1e-13
PF02671.11.fs   2/3     187   243 ..     1    47 []    52.2  4.9e-13
PF02671.11.ls   3/3     328   374 ..     1    47 []    35.7  1.4e-07
PF02671.11.fs   3/3     328   374 ..     1    47 []    33.7  4.4e-08
PF08295.2.fs    1/1     400   500 ..     1   102 []   194.1  3.2e-55
PF08295.2.ls    1/1     400   500 ..     1   102 []   196.0  8.2e-56

Alignments of top-scoring domains:
PF02671.11.fs: domain 1 of 3, from 66 to 112: score 63.8, E = 3.7e-16
                   *->pekYdsFlkiLnmykakridkdelfarvseLLkdhpdLlegFsaFlp
                      p++Y+ Fl+i++++k + id++++++rvs+L+ +hpdL+ gF+aFlp
    KIAA0700    66    PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLP 112  

                   <-*
                      
    KIAA0700     -     -    

PF02671.11.ls: domain 1 of 3, from 66 to 112: score 65.8, E = 1.3e-16
                   *->pekYdsFlkiLnmykakridkdelfarvseLLkdhpdLlegFsaFlp
                      p++Y+ Fl+i++++k + id++++++rvs+L+ +hpdL+ gF+aFlp
    KIAA0700    66    PATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLP 112  

                   <-*
                      
    KIAA0700     -     -    

PF02671.11.ls: domain 2 of 3, from 187 to 243: score 54.2, E = 4.1e-13
                   *->pekYdsFlkiLnmykakridkd..........elfarvseLLkdhpd
                      pe+Y+sFl+iL+ y+++++++ +++ ++ +++e+f++v+ L+++ +d
    KIAA0700   187    PEIYRSFLEILHTYQKEQLNTRgrpfrgmseeEVFTEVANLFRGQED 233  

                   LlegFsaFlp<-*
                   Ll +F +Flp   
    KIAA0700   234 LLSEFGQFLP    243  

PF02671.11.fs: domain 2 of 3, from 187 to 243: score 52.2, E = 4.9e-13
                   *->pekYdsFlkiLnmykakridkd..........elfarvseLLkdhpd
                      pe+Y+sFl+iL+ y+++++++ +++ ++ +++e+f++v+ L+++ +d
    KIAA0700   187    PEIYRSFLEILHTYQKEQLNTRgrpfrgmseeEVFTEVANLFRGQED 233  

                   LlegFsaFlp<-*
                   Ll +F +Flp   
    KIAA0700   234 LLSEFGQFLP    243  

PF02671.11.ls: domain 3 of 3, from 328 to 374: score 35.7, E = 1.4e-07
                   *->pekYdsFlkiLnmykakridkdelfarvseLLkdhpdLlegFsaFlp
                       e+Y+ Fl+++ +++++ ++ +el++ vs++L+  p+L+  F+ Fl 
    KIAA0700   328    QEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFAQFKSFLG 374  

                   <-*
                      
    KIAA0700     -     -    

PF02671.11.fs: domain 3 of 3, from 328 to 374: score 33.7, E = 4.4e-08
                   *->pekYdsFlkiLnmykakridkdelfarvseLLkdhpdLlegFsaFlp
                       e+Y+ Fl+++ +++++ ++ +el++ vs++L+  p+L+  F+ Fl 
    KIAA0700   328    QEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFAQFKSFLG 374  

                   <-*
                      
    KIAA0700     -     -    

PF08295.2.fs: domain 1 of 1, from 400 to 500: score 194.1, E = 3.2e-55
                   *->nCercgPSYRlLPkseplppCSgRddLcweVLNDhWVSvPTwASEDs
                      +C+r+g SYR+LPk + +p+CSgR+ +c+eVLND+WVS+P w  EDs
    KIAA0700   400    SCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWS-EDS 445  

                   gFvhhRKNQYEEsLfrcEDERfElDrllEsnsstIklLeellekinnmsl
                   +Fv + K++YEE L+rcEDERfElD++lE+n++tI++Le +++k+++m +
    KIAA0700   446 TFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAP 495  

                   eeksk<-*
                   e ++k   
    KIAA0700   496 EDQEK    500  

PF08295.2.ls: domain 1 of 1, from 400 to 500: score 196.0, E = 8.2e-56
                   *->nCercgPSYRlLPkseplppCSgRddLcweVLNDhWVSvPTwASEDs
                      +C+r+g SYR+LPk + +p+CSgR+ +c+eVLND+WVS+P w  EDs
    KIAA0700   400    SCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWS-EDS 445  

                   gFvhhRKNQYEEsLfrcEDERfElDrllEsnsstIklLeellekinnmsl
                   +Fv + K++YEE L+rcEDERfElD++lE+n++tI++Le +++k+++m +
    KIAA0700   446 TFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAP 495  

                   eeksk<-*
                   e ++k   
    KIAA0700   496 EDQEK    500  

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