hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10305924/chunk_1/iprscan-20080502-10305924.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0698
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF07731.4.fs Multicopper oxidase                         56.8    4.9e-16   2
PF07731.4.ls Multicopper oxidase                         56.7    6.9e-14   1
PF07732.5.fs Multicopper oxidase                         23.5    3.7e-06   3
PF00394.12.ls Multicopper oxidase                         -3.4    0.00037   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00394.12.ls   1/1     176   313 ..     1   187 []    -3.4  0.00037
PF07732.5.fs   2/3     401   428 ..    24    52 ..    10.9    0.014
PF07731.4.fs   2/2     896  1012 ..     1   151 []    55.0  1.6e-15
PF07731.4.ls   1/1     896  1012 ..     1   151 []    56.7  6.9e-14

Alignments of top-scoring domains:
PF00394.12.ls: domain 1 of 1, from 176 to 313: score -3.4, E = 0.00037
                   *->edtvitLsDWY.hkdakelek.llasgklptgwvn.mrppvpdavLI
                      +++v     W+ ++++ + + +  +  k  + +++++r+     + I
    KIAA0698   176    FSVVDENLSWHlNENIATYCSdPASVDKEDETFQEsNRM-----HAI 217  

                   NGkggflgncapkdvndslpCllkgavgadlavltvepGKtYRlRiihNv
                   NG   f+                     ++l++l++++ K++ +++ +++
    KIAA0698   218 NG---FV--------------------FGNLPELNMCAQKRVAWHLFGMG 244  

                   glddslnFsIdGHkmTVVEvGDVWDGvyvkaPftvdsldIfvGQrysVlv
                      d ++ +++G                +     +d  +If+++  ++ +
    KIAA0698   245 NEIDVHTAFFHGQ------------MLTTR-GHHTDVANIFPATFVTAEM 281  

                   tAknqpvgnYwivanPnmgssyrfg.ipafdngtttaiLrYsga<-*
                         +g++ i++            + +f+ g+++ +++ s++   
    KIAA0698   282 VP-WE-PGTWLISC----------QvNSHFRDGMQALYKVKSCS    313  

PF07732.5.fs: domain 2 of 3, from 401 to 428: score 10.9, E = 0.014
                   *->fPGPtIrvreGDtvvvnVtNnLkdentti<-*
                      ++GP Ir+  GDt+ v ++N+  ++++++   
    KIAA0698   401    ILGPVIRAEVGDTIQVVFYNRA-SQPFSM    428  

PF07731.4.fs: domain 2 of 2, from 896 to 1012: score 55.0, E = 1.6e-15
                   *->dtppkpptllqitgmrydwsigngdtsigingfdndmnrpdnnpplg
                       ++++ +t l                         +  ++ n+ ++ 
    KIAA0698   896    SINLQDETFLES-----------------------NKMHAINGKLYA 919  

                   gtnvitlpngdrveivlqNndtg.lpHPfHLHGhdFqVlgrgggnwdpky
                   + + +t+ +g+rv +++  ++++ + H++H+H  +F      + +     
    KIAA0698   920 NLRGLTMYQGERVAWYMLAMGQDvDLHTIHFHAESFLYRNGENYR----- 964  

                   nlvnPprRDTvqvppggwvairFkaDNPGvWlfHCHilrwHldqGmamvf
                           D+v++ pg   +++++a NPG Wl+HCH+   H+ +Gm + f
    KIAA0698   965 -------ADVVDLFPGTFEVVEMVASNPGTWLMHCHVT-DHVHAGMETLF 1006 

                   vvdp.s<-*
                    v  +    
    KIAA0698  1007 TVFSrT    1012 

PF07731.4.ls: domain 1 of 1, from 896 to 1012: score 56.7, E = 6.9e-14
                   *->dtppkpptllqitgmrydwsigngdtsigingfdndmnrpdnnpplg
                       ++++ +t l                         +  ++ n+ ++ 
    KIAA0698   896    SINLQDETFLES-----------------------NKMHAINGKLYA 919  

                   gtnvitlpngdrveivlqNndtg.lpHPfHLHGhdFqVlgrgggnwdpky
                   + + +t+ +g+rv +++  ++++ + H++H+H  +F      + +     
    KIAA0698   920 NLRGLTMYQGERVAWYMLAMGQDvDLHTIHFHAESFLYRNGENYR----- 964  

                   nlvnPprRDTvqvppggwvairFkaDNPGvWlfHCHilrwHldqGmamvf
                           D+v++ pg   +++++a NPG Wl+HCH+   H+ +Gm + f
    KIAA0698   965 -------ADVVDLFPGTFEVVEMVASNPGTWLMHCHVT-DHVHAGMETLF 1006 

                   vvdp.s<-*
                    v  +    
    KIAA0698  1007 TVFSrT    1012 

//