hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10253657/chunk_1/iprscan-20080502-10253657.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0695 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00888.12.ls Cullin family 793.0 1.6e-235 1 PF00888.12.fs Cullin family 791.2 5.7e-235 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00888.12.fs 1/1 85 683 .. 1 656 [] 791.2 5.7e-235 PF00888.12.ls 1/1 85 683 .. 1 656 [] 793.0 1.6e-235 Alignments of top-scoring domains: PF00888.12.fs: domain 1 of 1, from 85 to 683: score 791.2, E = 5.7e-235 *->WekLrdaidkiltnlknfsslsymeLYtaVYnmCtstsavphklgek W kL++a+++i+ + + ++eLY+aV n+ + k ++ KIAA0695 85 WQKLKEAVEAIQ--NSTSIKYNLEELYQAVENL------CSYKISAN 123 LYnrLkeyleeyvka.lrkslleisddenlLkeyikeWkdfttsmkmind LY++L++++e+++ka++++ +++ d +Lk++ ++W++++++m mi+ KIAA0695 124 LYKQLRQICEDHIKAqIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRS 173 ifmYLdRyyvkrnidgkkevyeiyeLgLdiWrellfdn..ikdrlidalL if+ LdR+yv +n +++i+++gL+++r ++ +++++++id++L KIAA0695 174 IFLFLDRTYVLQN----SMLPSIWDMGLELFRAHIISDqkVQNKTIDGIL 219 elIekeRlGeaidr.liknvidmlvsLgldekDmkkqklevYkedFEkpF lIe+eR+Geaidr+l++++++ml l++Y+++FE +F KIAA0695 220 LLIERERNGEAIDRsLLRSLLSMLS------------DLQIYQDSFEQRF 257 LeaTseFYkkesskfLqensvseYmkkvEkrLeeEeeRvrlYLhsstekk Le+T++ Y++e +k++qe +v+eY+ +v krLeeE +R+ YL+ t k KIAA0695 258 LEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKS 307 LievvekvLIekHletLlmehsefq.LldnnkieDLrrMYrLlsRvpnGL Li++vek+L+ +Hl+ + +++++ +Lld+n+i+DL+++Y+L+sRv +G+ KIAA0695 308 LIATVEKQLLGEHLTAI--LQKGLNnLLDENRIQDLSLLYQLFSRVRGGV 355 eplrkilekhvkkeGlaavsklaaetdpkdyVeeLLelhdkydslvneaF + l+++ +++k+ G +v + ++++k++V+eLL+++dk d+++ +F KIAA0695 356 QVLLQQWIEYIKAFGSTIVIN---PEKDKTMVQELLDFKDKVDHIIDICF 402 nnDplFlnaLdkAfesfiNsnvvtkrskspELLAkYcDdlLKKgsKglee ++++F na+++Afe+fiN++ +k++EL+AkY+D++L+ g+K +++ KIAA0695 403 LKNEKFINAMKEAFETFINKRP----NKPAELIAKYVDSKLRAGNKEATD 448 eeleekldkiivlfkyiedKDvFekfYrkmLAkRLLngkSasLddaEkrm eele++ldki+++f++i +KDvFe+fY+k+LAkRLL gkSas +daEk+m KIAA0695 449 EELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSAS-VDAEKSM 497 iskLKqvecGyefTsKLegMfkDislSkelnnsFknhlennndnldlkle +skLK ecG +fTsKLegMfkD++lSk+++ +Fk++++n+n KIAA0695 498 LSKLKH-ECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQNVPG----- 541 deeneEgidlsvlvLstgfWPtlp.epsinfnLPeelekalerFeefYlk +i+l+v++L+ g+WPt+ +++ ++LP+e++k++e+F+ fYl KIAA0695 542 ------NIELTVNILTMGYWPTYVpME---VHLPPEMVKLQEIFKTFYLG 582 khsgpdRkLtWlhsLGkgelkaefndgtkskyeltVstyQmavLLlFNdk khsg RkL+W+ LG+++lkaef+ g+ +el+Vs++Q vLL FN++ KIAA0695 583 KHSG--RKLQWQSTLGHCVLKAEFKEGK---KELQVSLFQTLVLLMFNEG 627 eeltyeelqeatqipddeLrrtLqsLlkakvllllllryetigekspkdk ee+++ee+++at+i+d eLrrtLqsL+++k ++l k+pk+k KIAA0695 628 EEFSLEEIKQATGIEDGELRRTLQSLACGKARVLA---------KNPKGK 668 eispntkfslNsdft<-* +i++++kf+ N+df+ KIAA0695 669 DIEDGDKFICNDDFK 683 PF00888.12.ls: domain 1 of 1, from 85 to 683: score 793.0, E = 1.6e-235 *->WekLrdaidkiltnlknfsslsymeLYtaVYnmCtstsavphklgek W kL++a+++i+ + + ++eLY+aV n+ + k ++ KIAA0695 85 WQKLKEAVEAIQ--NSTSIKYNLEELYQAVENL------CSYKISAN 123 LYnrLkeyleeyvka.lrkslleisddenlLkeyikeWkdfttsmkmind LY++L++++e+++ka++++ +++ d +Lk++ ++W++++++m mi+ KIAA0695 124 LYKQLRQICEDHIKAqIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRS 173 ifmYLdRyyvkrnidgkkevyeiyeLgLdiWrellfdn..ikdrlidalL if+ LdR+yv +n +++i+++gL+++r ++ +++++++id++L KIAA0695 174 IFLFLDRTYVLQN----SMLPSIWDMGLELFRAHIISDqkVQNKTIDGIL 219 elIekeRlGeaidr.liknvidmlvsLgldekDmkkqklevYkedFEkpF lIe+eR+Geaidr+l++++++ml l++Y+++FE +F KIAA0695 220 LLIERERNGEAIDRsLLRSLLSMLS------------DLQIYQDSFEQRF 257 LeaTseFYkkesskfLqensvseYmkkvEkrLeeEeeRvrlYLhsstekk Le+T++ Y++e +k++qe +v+eY+ +v krLeeE +R+ YL+ t k KIAA0695 258 LEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKS 307 LievvekvLIekHletLlmehsefq.LldnnkieDLrrMYrLlsRvpnGL Li++vek+L+ +Hl+ + +++++ +Lld+n+i+DL+++Y+L+sRv +G+ KIAA0695 308 LIATVEKQLLGEHLTAI--LQKGLNnLLDENRIQDLSLLYQLFSRVRGGV 355 eplrkilekhvkkeGlaavsklaaetdpkdyVeeLLelhdkydslvneaF + l+++ +++k+ G +v + ++++k++V+eLL+++dk d+++ +F KIAA0695 356 QVLLQQWIEYIKAFGSTIVIN---PEKDKTMVQELLDFKDKVDHIIDICF 402 nnDplFlnaLdkAfesfiNsnvvtkrskspELLAkYcDdlLKKgsKglee ++++F na+++Afe+fiN++ +k++EL+AkY+D++L+ g+K +++ KIAA0695 403 LKNEKFINAMKEAFETFINKRP----NKPAELIAKYVDSKLRAGNKEATD 448 eeleekldkiivlfkyiedKDvFekfYrkmLAkRLLngkSasLddaEkrm eele++ldki+++f++i +KDvFe+fY+k+LAkRLL gkSas +daEk+m KIAA0695 449 EELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSAS-VDAEKSM 497 iskLKqvecGyefTsKLegMfkDislSkelnnsFknhlennndnldlkle +skLK ecG +fTsKLegMfkD++lSk+++ +Fk++++n+n KIAA0695 498 LSKLKH-ECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQNVPG----- 541 deeneEgidlsvlvLstgfWPtlp.epsinfnLPeelekalerFeefYlk +i+l+v++L+ g+WPt+ +++ ++LP+e++k++e+F+ fYl KIAA0695 542 ------NIELTVNILTMGYWPTYVpME---VHLPPEMVKLQEIFKTFYLG 582 khsgpdRkLtWlhsLGkgelkaefndgtkskyeltVstyQmavLLlFNdk khsg RkL+W+ LG+++lkaef+ g+ +el+Vs++Q vLL FN++ KIAA0695 583 KHSG--RKLQWQSTLGHCVLKAEFKEGK---KELQVSLFQTLVLLMFNEG 627 eeltyeelqeatqipddeLrrtLqsLlkakvllllllryetigekspkdk ee+++ee+++at+i+d eLrrtLqsL+++k ++l k+pk+k KIAA0695 628 EEFSLEEIKQATGIEDGELRRTLQSLACGKARVLA---------KNPKGK 668 eispntkfslNsdft<-* +i++++kf+ N+df+ KIAA0695 669 DIEDGDKFICNDDFK 683 //