hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10190504/chunk_1/iprscan-20080502-10190504.nocrc
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Query sequence: KIAA0691
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04065.5.ls Not1 N-terminal domain, CCR4-Not complex com   567.2   1.5e-167   1
PF04065.5.fs Not1 N-terminal domain, CCR4-Not complex com   565.4   5.1e-167   1
PF04153.8.fs NOT2 / NOT3 / NOT5 family                      202.8    6.6e-59   1
PF04153.8.ls NOT2 / NOT3 / NOT5 family                      203.6    4.1e-58   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04065.5.fs   1/1      11   251 ..     1   272 []   565.4 5.1e-167
PF04065.5.ls   1/1      11   251 ..     1   272 []   567.2 1.5e-167
PF04153.8.fs   1/1     589   757 ..     1   197 []   202.8  6.6e-59
PF04153.8.ls   1/1     589   757 ..     1   197 []   203.6  4.1e-58

Alignments of top-scoring domains:
PF04065.5.fs: domain 1 of 1, from 11 to 251: score 565.4, E = 5.1e-167
                   *->makRKLQqEIDrvlKKvsEGvElFddIweKvhstdnaNQkqkhhkEK
                      ++kRKLQ+EIDr+lKKvsEGvE+F+dIw+K+h+++naNQk     EK
    KIAA0691    11    ADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQK-----EK 52   

                   lEaDLKKEIKKLQRlRDQIKtWlssseIKDKkvsasYedsLldnRrlIEt
                   +EaDLKKEIKKLQRlRDQIKtW++s+eIKDK       ++L+dnR+lIEt
    KIAA0691    53 YEADLKKEIKKLQRLRDQIKTWVASNEIKDK-------RQLIDNRKLIET 95   

                   aMErFKvVEKetKtKafSKeGLgaqeklDPkekGDDleKreardwlnnvI
                   +MErFKvVE+etKtKa+SKeGLg+++k+DP++k    eK+e+++wl+n+I
    KIAA0691    96 QMERFKVVERETKTKAYSKEGLGLAQKVDPAQK----EKEEVGQWLTNTI 141  

                   deLnkQvDqlEaElesLSntDlGkGkRlkkkKkKtdsdrqeriedlKrki
                   d+Ln+QvDq+E+E+esLS         ++++KkK+d+d+q+rie+lKr+i
    KIAA0691   142 DTLNMQVDQFESEVESLS---------VQTRKKKGDKDKQDRIEGLKRHI 182  

                   eRhkfHIekLEliLRlLdNdeLdpeqVnetiKDDieYYVEsnQDDfpDFe
                   e+h++H+++LE+iLR+LdNd++ ++++++ iKDD+eYYV+s+QD  pDFe
    KIAA0691   183 EKHRYHVRMLETILRMLDNDSILVDAIRK-IKDDVEYYVDSSQD--PDFE 229  

                   EyDeiYddlevdEldEvelsesaqq<-*
                   E++++Yddl+   l++++++ +a++   
    KIAA0691   230 ENEFLYDDLD---LEDIPQALVATS    251  

PF04065.5.ls: domain 1 of 1, from 11 to 251: score 567.2, E = 1.5e-167
                   *->makRKLQqEIDrvlKKvsEGvElFddIweKvhstdnaNQkqkhhkEK
                      ++kRKLQ+EIDr+lKKvsEGvE+F+dIw+K+h+++naNQk     EK
    KIAA0691    11    ADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQK-----EK 52   

                   lEaDLKKEIKKLQRlRDQIKtWlssseIKDKkvsasYedsLldnRrlIEt
                   +EaDLKKEIKKLQRlRDQIKtW++s+eIKDK       ++L+dnR+lIEt
    KIAA0691    53 YEADLKKEIKKLQRLRDQIKTWVASNEIKDK-------RQLIDNRKLIET 95   

                   aMErFKvVEKetKtKafSKeGLgaqeklDPkekGDDleKreardwlnnvI
                   +MErFKvVE+etKtKa+SKeGLg+++k+DP++k    eK+e+++wl+n+I
    KIAA0691    96 QMERFKVVERETKTKAYSKEGLGLAQKVDPAQK----EKEEVGQWLTNTI 141  

                   deLnkQvDqlEaElesLSntDlGkGkRlkkkKkKtdsdrqeriedlKrki
                   d+Ln+QvDq+E+E+esLS         ++++KkK+d+d+q+rie+lKr+i
    KIAA0691   142 DTLNMQVDQFESEVESLS---------VQTRKKKGDKDKQDRIEGLKRHI 182  

                   eRhkfHIekLEliLRlLdNdeLdpeqVnetiKDDieYYVEsnQDDfpDFe
                   e+h++H+++LE+iLR+LdNd++ ++++++ iKDD+eYYV+s+QD  pDFe
    KIAA0691   183 EKHRYHVRMLETILRMLDNDSILVDAIRK-IKDDVEYYVDSSQD--PDFE 229  

                   EyDeiYddlevdEldEvelsesaqq<-*
                   E++++Yddl+   l++++++ +a++   
    KIAA0691   230 ENEFLYDDLD---LEDIPQALVATS    251  

PF04153.8.fs: domain 1 of 1, from 589 to 757: score 202.8, E = 6.6e-59
                   *->DlttlglnLnstensvtdklllttFagPwadqpakpkqqdpmE.AyY
                        ++ +++L ++e + ++++l   + gP + +++ ++qq + E A+ 
    KIAA0691   589    --ASAQPPLQLSEVN-IPLSLGVCPLGPVPLTKEQLYQQAMEEaAWH 632  

                   klPefgdekvPeeYstinpairpsltpqaQaPi..idnslilkklrvdlf
                   + P ++d+++ + Y+++np ++p+ +   Q+P+++ d+++++++     +
    KIAA0691   633 HMPHPSDSERIRQYLPRNPCPTPPYHH--QMPPphSDTVEFYQR-----L 675  

                   sddtLFflFYympgIDdvaQllAAkELFkkRgWRyHKeervWftRhpgme
                   s++tLFf+FYy +g  + aQ+lAAk L kk++WR+H+++++Wf+Rh+  e
    KIAA0691   676 STETLFFIFYYLEG--TKAQYLAAKAL-KKQSWRFHTKYMMWFQRHE--E 720  

                   PdknkvktdiQrEGeyErGsYeyFDpeksrelradWekirKegdFrleYe
                   P   k++td     e+E+G+Y+yFD+e +      W +++Ke +F++eY 
    KIAA0691   721 P---KTITD-----EFEQGTYIYFDYE-K------WGQRKKE-GFTFEYR 754  

                   yLe<-*
                   yLe   
    KIAA0691   755 YLE    757  

PF04153.8.ls: domain 1 of 1, from 589 to 757: score 203.6, E = 4.1e-58
                   *->DlttlglnLnstensvtdklllttFagPwadqpakpkqqdpmE.AyY
                        ++ +++L ++e + ++++l   + gP + +++ ++qq + E A+ 
    KIAA0691   589    --ASAQPPLQLSEVN-IPLSLGVCPLGPVPLTKEQLYQQAMEEaAWH 632  

                   klPefgdekvPeeYstinpairpsltpqaQaPi..idnslilkklrvdlf
                   + P ++d+++ + Y+++np ++p+ +   Q+P+++ d+++++++     +
    KIAA0691   633 HMPHPSDSERIRQYLPRNPCPTPPYHH--QMPPphSDTVEFYQR-----L 675  

                   sddtLFflFYympgIDdvaQllAAkELFkkRgWRyHKeervWftRhpgme
                   s++tLFf+FYy +g  + aQ+lAAk L kk++WR+H+++++Wf+Rh+  e
    KIAA0691   676 STETLFFIFYYLEG--TKAQYLAAKAL-KKQSWRFHTKYMMWFQRHE--E 720  

                   PdknkvktdiQrEGeyErGsYeyFDpeksrelradWekirKegdFrleYe
                   P   k++td     e+E+G+Y+yFD+e +      W +++Ke +F++eY 
    KIAA0691   721 P---KTITD-----EFEQGTYIYFDYE-K------WGQRKKE-GFTFEYR 754  

                   yLe<-*
                   yLe   
    KIAA0691   755 YLE    757  

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