hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10140962/chunk_1/iprscan-20080502-10140962.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0688 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00209 62.8 4.3e-14 1 SM00608 -7.3 0.00043 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00608 1/1 453 521 .. 1 152 [] -7.3 0.00043 SM00209 1/1 535 587 .. 1 66 [] 62.8 4.3e-14 Alignments of top-scoring domains: SM00608: domain 1 of 1, from 453 to 521: score -7.3, E = 0.00043 *->qDGtPCdngqgYCynGrCptrdqQCqalFGpgAkvApdsCYeevNsk D ++ d+QCq +FGp+++ C + + KIAA0688 453 KD----------------YDADRQCQLTFGPDSRH----CPQ-L--- 475 GdrfGNCGrensangtyipCapeDvkCGkLqCtnvtelPllgehatviqs + + C L+C + KIAA0688 476 ----------PPP-------------CAALWCSG---------------- 486 niggyiqkgi.tCwgtdyhlgtdPvdltidpDpGlVkdGTkCGpgKVCin +++ g+ +C++++++ dGT+CGp + C+ KIAA0688 487 HLN-----GHaMCQTKHSP---------W-------ADGTPCGPAQACMG 515 grCvdv<-* grC+++ KIAA0688 516 GRCLHM 521 SM00209: domain 1 of 1, from 535 to 587: score 62.8, E = 4.3e-14 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w++W++W++CS +tCGgG v+ +R c p p +ngg KIAA0688 535 WGPWGPWGDCS-RTCGGG-----VQFSSR-----DCTRPVP--RNGG 568 epCs....EtrpCntqpnLqpCp<-* ++C+++++ +r Cnt+ +Cp KIAA0688 569 KYCEgrrtRFRSCNTE----DCP 587 //