hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10021496/chunk_1/iprscan-20080502-10021496.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0681
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00561                                                 548.6   2.6e-160   3
SM00454                                                  41.1    1.5e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00561    1/3       1    92 [.     1   121 []   155.3  6.3e-42
SM00561    2/3     100   199 ..     1   121 []   202.5  3.9e-56
SM00561    3/3     208   303 ..     1   121 []   190.8  1.3e-52
SM00454    1/1     466   533 ..     1    67 []    41.1  1.5e-07

Alignments of top-scoring domains:
SM00561: domain 1 of 3, from 1 to 92: score 155.3, E = 6.3e-42
                   *->fdWeeyLikeetgaraaPvelF.dkqpvdsppngFkvGMKLEavDpD
                                  +a +aPv lF+d+q+v++ +ngFk+GMKLE +Dp 
    KIAA0681     1    ------Q-----KAITAPVSLFqDSQAVTHNKNGFKLGMKLEGIDP- 35   

                   yDcrnpslicvATVveVkGrgrlllhfddDyPELPvdGwdderVhesydf
                      ++ps++ + TV eV+G+ rl+lhfd         G++++     +df
    KIAA0681    36 ---QHPSMYFILTVAEVCGY-RLRLHFD---------GYSEC-----HDF 67   

                   WcdadSpdIfPvGWCeknghpLqpP<-*
                   W++a SpdI+P+GW ek+gh+LqpP   
    KIAA0681    68 WVNANSPDIHPAGWFEKTGHKLQPP    92   

SM00561: domain 2 of 3, from 100 to 199: score 202.5, E = 3.9e-56
                   *->fdWeeyLikeetgaraaPvelFdkqpvdsppngFkvGMKLEavDpDy
                      f+W+ yL  + t a+aaP++lF +q++ +pp gF+vGMKLEavD+  
    KIAA0681   100    FSWSQYL--RSTRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDR-- 142  

                   DcrnpslicvATVveVkGrgrlllhfddDyPELPvdGwdderVhesydfW
                     +npsl+cvA+V++V++  r+l+hfd          wdd+     yd+W
    KIAA0681   143 --MNPSLVCVASVTDVVDS-RFLVHFD---------NWDDT-----YDYW 175  

                   cdadSpdIfPvGWCeknghpLqpP<-*
                   cd +Sp+I+PvGWC+k+g+pL+pP   
    KIAA0681   176 CDPSSPYIHPVGWCQKQGKPLTPP    199  

SM00561: domain 3 of 3, from 208 to 303: score 190.8, E = 1.3e-52
                   *->fdWeeyLikeetgaraaPvelFdkqpvdsppngFkvGMKLEavDpDy
                      f+We+yL  eetga+a+P ++F     ++pp+ F v+MKLEavD+  
    KIAA0681   208    FCWEKYL--EETGASAVPTWAF----KVRPPHSFLVNMKLEAVDR-- 246  

                   DcrnpslicvATVveVkGrgrlllhfddDyPELPvdGwdderVhesydfW
                     rnp li+vA+V++V ++ r+++hfd         Gw++      ydfW
    KIAA0681   247 --RNPALIRVASVEDVEDH-RIKIHFD---------GWSHG-----YDFW 279  

                   cdadSpdIfPvGWCeknghpLqpP<-*
                   +dad+pdI+P+GWC k+ghpLqpP   
    KIAA0681   280 IDADHPDIHPAGWCSKTGHPLQPP    303  

SM00454: domain 1 of 1, from 466 to 533: score 41.1, E = 1.5e-07
                   *->vs.wspesVaeWLesigleq.YadnFrkngidgeelllltseedLke
                      v +w+ ++V  + + +  +++ a  F+++ idge++lllt ++d+ +
    KIAA0681   466    VAkWTIDEVFGFVQTLTGCEdQARLFKDEMIDGEAFLLLT-QADIVK 511  

                   lGitllGhRkkIlsaiqklkeq<-*
                   ++  +lG+ +kI +ai  +k+    
    KIAA0681   512 IMSVKLGPALKIYNAILMFKNA    533  

//