hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10021496/chunk_1/iprscan-20080502-10021496.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0681 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02820.9.ls mbt repeat 441.6 9.8e-130 3 PF02820.9.fs mbt repeat 435.7 5.7e-128 3 PF01530.9.ls Zinc finger, C2HC type 63.4 7e-16 1 PF01530.9.fs Zinc finger, C2HC type 61.4 1.9e-15 1 PF00536.20.fs SAM domain (Sterile alpha motif) 45.6 8.4e-13 1 PF00536.20.ls SAM domain (Sterile alpha motif) 47.6 3.9e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02820.9.fs 1/3 28 101 .. 1 77 [] 164.5 2.5e-46 PF02820.9.ls 1/3 28 101 .. 1 77 [] 166.4 6.5e-47 PF02820.9.ls 2/3 135 208 .. 1 77 [] 141.5 2.1e-39 PF02820.9.fs 2/3 135 208 .. 1 77 [] 139.5 8.3e-39 PF02820.9.ls 3/3 239 312 .. 1 77 [] 133.7 4.8e-37 PF02820.9.fs 3/3 239 312 .. 1 77 [] 131.7 1.9e-36 PF01530.9.fs 1/1 337 367 .. 1 31 [] 61.4 1.9e-15 PF01530.9.ls 1/1 337 367 .. 1 31 [] 63.4 7e-16 PF00536.20.fs 1/1 467 531 .. 1 65 [] 45.6 8.4e-13 PF00536.20.ls 1/1 467 531 .. 1 65 [] 47.6 3.9e-11 Alignments of top-scoring domains: PF02820.9.fs: domain 1 of 3, from 28 to 101: score 164.5, E = 2.5e-46 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLE +Dp++ps++++ TV+eV+G+r LrL+fDG+++++ DfW+++ KIAA0681 28 MKLEGIDPQHPSMYFILTVAEVCGYR-LRLHFDGYSECH--DFWVNA 71 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* +SpdI+P+GW+ek+ghkLqPP+Gy++++fs KIAA0681 72 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFS 101 PF02820.9.ls: domain 1 of 3, from 28 to 101: score 166.4, E = 6.5e-47 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLE +Dp++ps++++ TV+eV+G+r LrL+fDG+++++ DfW+++ KIAA0681 28 MKLEGIDPQHPSMYFILTVAEVCGYR-LRLHFDGYSECH--DFWVNA 71 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* +SpdI+P+GW+ek+ghkLqPP+Gy++++fs KIAA0681 72 NSPDIHPAGWFEKTGHKLQPPKGYKEEEFS 101 PF02820.9.ls: domain 2 of 3, from 135 to 208: score 141.5, E = 2.1e-39 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLEAvD++npsl+CvA V++V++sr ++++fD wd+ y D+Wc+ KIAA0681 135 MKLEAVDRMNPSLVCVASVTDVVDSR-FLVHFDNWDDTY--DYWCDP 178 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* Sp+I+PvGWC k g++L+PP++y++++++ KIAA0681 179 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNF 208 PF02820.9.fs: domain 2 of 3, from 135 to 208: score 139.5, E = 8.3e-39 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLEAvD++npsl+CvA V++V++sr ++++fD wd+ y D+Wc+ KIAA0681 135 MKLEAVDRMNPSLVCVASVTDVVDSR-FLVHFDNWDDTY--DYWCDP 178 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* Sp+I+PvGWC k g++L+PP++y++++++ KIAA0681 179 SSPYIHPVGWCQKQGKPLTPPQDYPDPDNF 208 PF02820.9.ls: domain 3 of 3, from 239 to 312: score 133.7, E = 4.8e-37 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLEAvD+rnp li+vA V +V + r ++++fDGw+ y DfW ++ KIAA0681 239 MKLEAVDRRNPALIRVASVEDVEDHR-IKIHFDGWSHGY--DFWIDA 282 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* d pdI+P+GWC+k+gh+LqPP+G r++ + KIAA0681 283 DHPDIHPAGWCSKTGHPLQPPLGPREPSSA 312 PF02820.9.fs: domain 3 of 3, from 239 to 312: score 131.7, E = 1.9e-36 *->MKLEAvDprnpsliCvATVveVrGsrYLrLrfDGwdseyraDfWchv MKLEAvD+rnp li+vA V +V + r ++++fDGw+ y DfW ++ KIAA0681 239 MKLEAVDRRNPALIRVASVEDVEDHR-IKIHFDGWSHGY--DFWIDA 282 dSpdIfPvGWCeknghkLqPPpGyrskkfs<-* d pdI+P+GWC+k+gh+LqPP+G r++ + KIAA0681 283 DHPDIHPAGWCSKTGHPLQPPLGPREPSSA 312 PF01530.9.fs: domain 1 of 1, from 337 to 367: score 61.4, E = 1.9e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* + kCPtpGCdGsGHvtGk+t+H++lsGCPla KIAA0681 337 HRKCPTPGCDGSGHVTGKFTAHHCLSGCPLA 367 PF01530.9.ls: domain 1 of 1, from 337 to 367: score 63.4, E = 7e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* + kCPtpGCdGsGHvtGk+t+H++lsGCPla KIAA0681 337 HRKCPTPGCDGSGHVTGKFTAHHCLSGCPLA 367 PF00536.20.fs: domain 1 of 1, from 467 to 531: score 45.6, E = 8.4e-13 *->dgwsfesVgeWLesi.glgqYidnFlsagyidgdtllqlteeDLedl w+ ++V + + ++g++ + F + ++idg+++l+lt+ D++++ KIAA0681 467 AKWTIDEVFGFVQTLtGCEDQARLF-KDEMIDGEAFLLLTQADIVKI 512 GvtllGHrkKIlssIqgLk<-* ++lG+++KI+++I ++k KIAA0681 513 MSVKLGPALKIYNAILMFK 531 PF00536.20.ls: domain 1 of 1, from 467 to 531: score 47.6, E = 3.9e-11 *->dgwsfesVgeWLesi.glgqYidnFlsagyidgdtllqlteeDLedl w+ ++V + + ++g++ + F + ++idg+++l+lt+ D++++ KIAA0681 467 AKWTIDEVFGFVQTLtGCEDQARLF-KDEMIDGEAFLLLTQADIVKI 512 GvtllGHrkKIlssIqgLk<-* ++lG+++KI+++I ++k KIAA0681 513 MSVKLGPALKIYNAILMFK 531 //