hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10003312/chunk_1/iprscan-20080502-10003312.nocrc
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Query sequence: KIAA0680
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02755.6.fs RPEL repeat                                    169.7    3.2e-52   4
PF02755.6.ls RPEL repeat                                    177.7    2.7e-50   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02755.6.fs   1/4      61    86 ..     1    26 []    40.8  8.4e-12
PF02755.6.ls   1/4      61    86 ..     1    26 []    42.8  1.1e-09
PF02755.6.ls   2/4     478   503 ..     1    26 []    45.9  1.3e-10
PF02755.6.fs   2/4     478   503 ..     1    26 []    43.9  9.2e-13
PF02755.6.fs   3/4     516   541 ..     1    26 []    43.9  9.4e-13
PF02755.6.ls   3/4     516   541 ..     1    26 []    45.8  1.3e-10
PF02755.6.ls   4/4     554   579 ..     1    26 []    43.1  8.6e-10
PF02755.6.fs   4/4     554   579 ..     1    26 []    41.1  6.7e-12

Alignments of top-scoring domains:
PF02755.6.fs: domain 1 of 4, from 61 to 86: score 40.8, E = 8.4e-12
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      ++L+rK+S+R++reEL+rr++Lke++   
    KIAA0680    61    AVLERKISTRQSREELIRRGVLKELP    86   

PF02755.6.ls: domain 1 of 4, from 61 to 86: score 42.8, E = 1.1e-09
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      ++L+rK+S+R++reEL+rr++Lke++   
    KIAA0680    61    AVLERKISTRQSREELIRRGVLKELP    86   

PF02755.6.ls: domain 2 of 4, from 478 to 503: score 45.9, E = 1.3e-10
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      d+La+KL++RP+++ELe++nIL++++   
    KIAA0680   478    DTLAIKLGNRPSKKELEDKNILQRTS    503  

PF02755.6.fs: domain 2 of 4, from 478 to 503: score 43.9, E = 9.2e-13
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      d+La+KL++RP+++ELe++nIL++++   
    KIAA0680   478    DTLAIKLGNRPSKKELEDKNILQRTS    503  

PF02755.6.fs: domain 3 of 4, from 516 to 541: score 43.9, E = 9.4e-13
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      ++L+r+LSqRPt+eELe+rnILk+++   
    KIAA0680   516    TKLVRRLSQRPTTEELEQRNILKQKN    541  

PF02755.6.ls: domain 3 of 4, from 516 to 541: score 45.8, E = 1.3e-10
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      ++L+r+LSqRPt+eELe+rnILk+++   
    KIAA0680   516    TKLVRRLSQRPTTEELEQRNILKQKN    541  

PF02755.6.ls: domain 4 of 4, from 554 to 579: score 43.1, E = 8.6e-10
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      ++L+rKLS RPt++EL++r+IL+++e   
    KIAA0680   554    RRLSRKLSLRPTVAELQARRILRFNE    579  

PF02755.6.fs: domain 4 of 4, from 554 to 579: score 41.1, E = 6.7e-12
                   *->dlLarKLSqRPtreELerrnILkeee<-*
                      ++L+rKLS RPt++EL++r+IL+++e   
    KIAA0680   554    RRLSRKLSLRPTVAELQARRILRFNE    579  

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